CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma. - Ziyi Li 005; Binbin Wang; Shengqing Gu; Peng Jiang 006; Avinash Das Sahu; Chen-Hao Chen; Tong Han; Sailing Shi; Xiaoqing Wang; Nicole Traugh; Hailing Liu; Yin Liu; et al. (Genom. Proteom. Bioinform., 2020)

TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. - Dongqing Sun; Jin Wang; Ya Han; Xin Dong; Jun Ge; Rongbin Zheng; Xiaoying Shi; Binbin Wang; Ziyi Li 005; Pengfei Ren; Liangdong Sun; Yilv Yan; et al. (Nucleic Acids Res., 2021)

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics. - Ziyi Li 005; Cory A. Weller; Syed Shah; Nicholas L. Johnson; Ying Hao; Paige B. Jarreau; Jessica Roberts; Deyaan Guha; Colleen Bereda; Sydney Klaisner; Pedro Machado; Matteo Zanovello; et al. (Genom. Proteom. Bioinform., 2025)