Sigflow: an automated and comprehensive pipeline for cancer genome mutational signature analysis. - Shixiang Wang; Ziyu Tao; Tao Wu; Xue-Song Liu (Bioinform., 2021)

UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data. - Shixiang Wang; Yi Xiong; Longfei Zhao; Kai Gu; Yin Li; Fei Zhao; Jianfeng Li; Mingjie Wang; Haitao Wang; Ziyu Tao; Tao Wu; Yichao Zheng; et al. (Bioinform., 2022)

The repertoire of copy number alteration signatures in human cancer. - Ziyu Tao; Shixiang Wang; Chenxu Wu; Tao Wu; Xiangyu Zhao; Wei Ning; Guangshuai Wang; Jinyu Wang; Jing Chen; Kaixuan Diao; Fuxiang Chen; Xue-Song Liu (Briefings Bioinform., 2023)