Time series event correlation with DTW and Hierarchical Clustering methods. - Srishti Mishra; Zohair Shafi; Santanu Pathak (PeerJ Prepr., 2019)

RAWLSNET: Altering Bayesian Networks to Encode Rawlsian Fair Equality of Opportunity. - David Liu 006; Zohair Shafi; William Fleisher; Tina Eliassi-Rad; Scott Alfeld (AIES, 2021)

PATHATTACK: Attacking Shortest Paths in Complex Networks. - Benjamin A. Miller; Zohair Shafi; Wheeler Ruml; Yevgeniy Vorobeychik; Tina Eliassi-Rad; Scott Alfeld (ECML/PKDD (2), 2021)

Optimal Edge Weight Perturbations to Attack Shortest Paths. - Benjamin A. Miller; Zohair Shafi; Wheeler Ruml; Yevgeniy Vorobeychik; Tina Eliassi-Rad; Scott Alfeld (CoRR, 2021)

AI-Bind: Improving Binding Predictions for Novel Protein Targets and Ligands. - Ayan Chatterjee; Omair Shafi Ahmed; Robin Walters 001; Zohair Shafi; Deisy Morselli Gysi; Rose Yu; Tina Eliassi-Rad; Albert-László Barabási; Giulia Menichetti (CoRR, 2021)

Graph-SCP: Accelerating Set Cover Problems with Graph Neural Networks. - Zohair Shafi; Benjamin A. Miller; Tina Eliassi-Rad; Rajmonda Sulo Caceres (CoRR, 2023)

GRASP: Accelerating Shortest Path Attacks via Graph Attention. - Zohair Shafi; Benjamin A. Miller; Ayan Chatterjee; Tina Eliassi-Rad; Rajmonda Sulo Caceres (CoRR, 2023)

Generating Human Understandable Explanations for Node Embeddings. - Zohair Shafi; Ayan Chatterjee; Tina Eliassi-Rad (CoRR, 2024)

Attacking Shortest Paths by Cutting Edges. - Benjamin A. Miller; Zohair Shafi; Wheeler Ruml; Yevgeniy Vorobeychik; Tina Eliassi-Rad; Scott Alfeld (ACM Trans. Knowl. Discov. Data, 2024)

Accelerated Discovery of Set Cover Solutions via Graph Neural Networks. - Zohair Shafi; Benjamin A. Miller; Tina Eliassi-Rad; Rajmonda Sulo Caceres (CPAIOR (2), 2025)

Defense Against Shortest Path Attacks. - Benjamin A. Miller; Zohair Shafi; Wheeler Ruml; Yevgeniy Vorobeychik; Tina Eliassi-Rad; Scott Alfeld (SDM, 2025)

REGE: A Method for Incorporating Uncertainty in Graph Embeddings. - Zohair Shafi; Germans Savcisens; Tina Eliassi-Rad (SDM, 2025)

Explaining Node Embeddings. - Zohair Shafi; Ayan Chatterjee; Tina Eliassi-Rad (Trans. Mach. Learn. Res., 2025)