On the Sample Complexity of Learning Bayesian Networks. - Nir Friedman; Zohar Yakhini (UAI, 1996)

Clustering gene expression patterns. - Amir Ben-Dor; Zohar Yakhini (RECOMB, 1999)

Clustering Gene Expression Patterns. - Amir Ben-Dor; Ron Shamir; Zohar Yakhini (J. Comput. Biol., 1999)

Tissue Classification with Gene Expression Profiles. - Amir Ben-Dor; Laurakay Bruhn; Nir Friedman; Iftach Nachman; Michèl Schummer; Zohar Yakhini (J. Comput. Biol., 2000)

Universal DNA Tag Systems: A Combinatorial Design Scheme. - Amir Ben-Dor; Richard M. Karp; Benno Schwikowski; Zohar Yakhini (J. Comput. Biol., 2000)

Class discovery in gene expression data. - Amir Ben-Dor; Nir Friedman; Zohar Yakhini (RECOMB, 2001)

Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome. - Doron Lipson; Peter Webb; Zohar Yakhini (WABI, 2002)

Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases. - Anya Tsalenko; Amir Ben-Dor; Nancy Cox; Zohar Yakhini (Pacific Symposium on Biocomputing, 2003)

Towards optimally multiplexed applications of universal DNA tag systems. - Amir Ben-Dor; Tzvika Hartman; Benno Schwikowski; Roded Sharan; Zohar Yakhini (RECOMB, 2003)

A Distance-Based Branch and Bound Feature Selection Algorithm. - Ari Frank; Dan Geiger; Zohar Yakhini (UAI, 2003)

Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem. - Amir Ben-Dor; Benny Chor; Richard M. Karp; Zohar Yakhini (J. Comput. Biol., 2003)

Multiplexing Schemes for Generic SNP Genotyping Assays. - Roded Sharan; Amir Ben-Dor; Zohar Yakhini (Pacific Symposium on Biocomputing, 2004)

Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. - Chaya Ben-Zaken Zilberstein; Eleazar Eskin; Zohar Yakhini (Regulatory Genomics, 2004)

Joint Analysis of DNA Copy Numbers and Gene Expression Levels. - Doron Lipson; Amir Ben-Dor; Elinor Dehan; Zohar Yakhini (WABI, 2004)

Towards Optimally Multiplexed Applications of Universal Arrays. - Amir Ben-Dor; Tzvika Hartman; Richard M. Karp; Benno Schwikowski; Roded Sharan; Zohar Yakhini (J. Comput. Biol., 2004)

Dotted interval graphs and high throughput genotyping. - Yonatan Aumann; Moshe Lewenstein; Oren Melamud; Ron Y. Pinter; Zohar Yakhini (SODA, 2005)

Exploratory visualization of array-based comparative genomic hybridization. - Robert Kincaid; Amir Ben-Dor; Zohar Yakhini (Inf. Vis., 2005)

Multiplexing Schemes for Generic SNP Genotyping Assays. - Roded Sharan; Jens Gramm; Zohar Yakhini; Amir Ben-Dor (J. Comput. Biol., 2005)

Finding Approximate Tandem Repeats in Genomic Sequences. - Ydo Wexler; Zohar Yakhini; Yechezkel Kashi; Dan Geiger (J. Comput. Biol., 2005)

Designing optimally multiplexed SNP genotyping assays. - Yonatan Aumann; Efrat Manisterski; Zohar Yakhini (J. Comput. Syst. Sci., 2005)

Analysis of Snp-expression Association Matrices. - Anya Tsalenko; Roded Sharan; Vessela N. Kristensen; Hege Edvardsen; Anne-Lise Børresen-Dale; Amir Ben-Dor; Zohar Yakhini (J. Bioinform. Comput. Biol., 2006)

Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis. - Doron Lipson; Yonatan Aumann; Amir Ben-Dor; Nathan Linial; Zohar Yakhini (J. Comput. Biol., 2006)

A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions. - Chaya Ben-Zaken Zilberstein; Michal Ziv-Ukelson; Ron Y. Pinter; Zohar Yakhini (J. Comput. Biol., 2006)

Framework for Identifying Common Aberrations in DNA Copy Number Data. - Amir Ben-Dor; Doron Lipson; Anya Tsalenko; Mark Reimers; Lars O. Baumbusch; Michael T. Barrett; John N. Weinstein; Anne-Lise Børresen-Dale; Zohar Yakhini (RECOMB, 2007)

Optimization of probe coverage for high-resolution oligonucleotide aCGH. - Doron Lipson; Zohar Yakhini; Yonatan Aumann (Bioinform., 2007)

Similarities and differences of gene expression in yeast stress conditions. - Oleg Rokhlenko; Ydo Wexler; Zohar Yakhini (Bioinform., 2007)

A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. - Nir Yosef; Zohar Yakhini; Anya Tsalenko; Vessela N. Kristensen; Anne-Lise Børresen-Dale; Eytan Ruppin; Roded Sharan (Bioinform., 2007)

Semi-supervised class discovery using quantitative phenotypes - CVD as a case study. - Israel Steinfeld; Roy Navon; Diego Ardigò; Ivana Zavaroni; Zohar Yakhini (BMC Bioinform., 2007)

Discovering Motifs in Ranked Lists of DNA Sequences. - Eran Eden; Doron Lipson; Sivan Yogev; Zohar Yakhini (PLoS Comput. Biol., 2007)

Clinically driven semi-supervised class discovery in gene expression data. - Israel Steinfeld; Roy Navon; Diego Ardigò; Ivana Zavaroni; Zohar Yakhini (ECCB, 2008)

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. - Eran Eden; Roy Navon; Israel Steinfeld; Doron Lipson; Zohar Yakhini (BMC Bioinform., 2009)

Cancer Computational Biology. - Zohar Yakhini; Igor Jurisica (BMC Bioinform., 2011)

Dotted interval graphs. - Yonatan Aumann; Moshe Lewenstein; Oren Melamud; Ron Y. Pinter; Zohar Yakhini (ACM Trans. Algorithms, 2012)

DRIMust: a web server for discovering rank imbalanced motifs using suffix trees. - Limor Leibovich; Inbal Paz; Zohar Yakhini; Yael Mandel-Gutfreund (Nucleic Acids Res., 2013)

Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics. - Ilona Kifer; Amir Ben-Dor; Zohar Yakhini; Rui Mamede Branca; Janne Lehtiö; Ping Xu (BIBM, 2014)

Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs. - Limor Leibovich; Zohar Yakhini (Algorithms Mol. Biol., 2014)

ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types. - Israel Steinfeld; Roy Navon; Michael L. Creech; Zohar Yakhini; Anya Tsalenko (Bioinform., 2015)

RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps. - Matan Drory Retwitzer; Maya Polishchuk; Elena Churkin; Ilona Kifer; Zohar Yakhini; Danny Barash (Nucleic Acids Res., 2015)

Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data. - Shay Ben-Elazar; Benny Chor; Zohar Yakhini (Bioinform., 2016)

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation. - Dalia Cohn-Alperovich; Alona Rabner; Ilona Kifer; Yael Mandel-Gutfreund; Zohar Yakhini (Bioinform., 2017)

Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics. - Ilona Kifer; Rui Mamede Branca; Amir Ben-Dor; Linhui Zhai; Ping Xu; Janne Lehtiö; Zohar Yakhini (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data. - Maya Polishchuk; Inbal Paz; Zohar Yakhini; Yael Mandel-Gutfreund (Nucleic Acids Res., 2018)

Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention. - Alona Levy-Jurgenson; Xavier Tekpli; Vessela N. Kristensen; Zohar Yakhini (AlCoB, 2019)

IoT or NoT: Identifying IoT Devices in a ShortTime Scale. - Anat Bremler-Barr; Haim Levy; Zohar Yakhini (CoRR, 2019)

Linear-Regression on Packed Encrypted Data in the Two-Server Model. - Adi Akavia; Hayim Shaul; Mor Weiss; Zohar Yakhini (IACR Cryptol. ePrint Arch., 2019)

IoT or NoT: Identifying IoT Devices in a Short Time Scale. - Anat Bremler-Barr; Haim Levy; Zohar Yakhini (NOMS, 2020)

Faithful Autoencoder Interpolation by Shaping the Latent Space. - Alon Oring; Zohar Yakhini; Yacov Hel-Or (CoRR, 2020)

Autoencoder Image Interpolation by Shaping the Latent Space. - Alon Oring; Zohar Yakhini; Yacov Hel-Or (ICML, 2021)

Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis. - Roy Shafir; Omer Sabary; Leon Anavy; Eitan Yaakobi; Zohar Yakhini (ITW, 2021)

On the stability of log-rank test under labeling errors. - Ben Galili; Anat Samohi; Zohar Yakhini (Bioinform., 2021)

Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging. - Alona Levy-Jurgenson; Xavier Tekpli; Zohar Yakhini (Bioinform., 2021)

SOLQC: Synthetic Oligo Library Quality Control tool. - Omer Sabary; Yoav Orlev; Roy Shafir; Leon Anavy; Eitan Yaakobi; Zohar Yakhini (Bioinform., 2021)

miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. - Shay Ben-Elazar; Miriam Ragle Aure; Kristin Jonsdottir; Suvi-Katri Leivonen; Vessela N. Kristensen; Emiel A. M. Janssen; Kristine Kleivi Sahlberg; Ole Christian Lingjærde; Zohar Yakhini (PLoS Comput. Biol., 2021)

Erratum to: Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging. - Alona Levy-Jurgenson; Xavier Tekpli; Zohar Yakhini (Bioinform., 2021)

Generating Alerts from Breathing Pattern Outliers. - Chloé Benmussa; Jessica R. Cauchard; Zohar Yakhini (Sensors, 2022)

Efficient Privacy-Preserving Viral Strain Classification via k-mer Signatures and FHE. - Adi Akavia; Ben Galili; Hayim Shaul; Mor Weiss; Zohar Yakhini (IACR Cryptol. ePrint Arch., 2023)

Efficient Random Sampling from Very Large Databases. - Idan Cohen; Aviv Yehezkel; Zohar Yakhini (DEXA (1), 2024)

Representing Information on DNA Using Patterns Induced by Enzymatic Labeling. - Daniella Bar-Lev; Tuvi Etzion; Eitan Yaakobi; Zohar Yakhini (ISIT, 2024)

Error-Correcting Codes for Combinatorial Composite DNA. - Omer Sabary; Inbal Preuss; Ryan Gabrys; Zohar Yakhini; Leon Anavy; Eitan Yaakobi (ISIT, 2024)

Studying the Cycle Complexity of DNA Synthesis. - Amit Zrihan; Eitan Yaakobi; Zohar Yakhini (ITW, 2024)

Error-Correcting Codes for Combinatorial DNA Composite. - Omer Sabary; Inbal Preuss; Ryan Gabrys; Zohar Yakhini; Leon Anavy; Eitan Yaakobi (CoRR, 2024)

Tighter Bounds on the Information Bottleneck with Application to Deep Learning. - Nir Weingarten; Zohar Yakhini; Moshe Butman; Ran Gilad-Bachrach (CoRR, 2024)

Generative Topological Networks. - Alona Levy-Jurgenson; Zohar Yakhini (CoRR, 2024)

High Information Density and Low Coverage Data Storage in DNA with Efficient Channel Coding Schemes. - Yi Ding; Xuan He; Tuan Thanh Nguyen; Wentu Song; Zohar Yakhini; Eitan Yaakobi; Linqiang Pan; Xiaohu Tang; Kui Cai 001 (CoRR, 2024)

HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs. - Ron Zeira; Leon Anavy; Zohar Yakhini; Ehud Rivlin; Daniel Freedman (PLoS Comput. Biol., 2024)

Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis. - Roy Shafir; Omer Sabary; Leon Anavy; Eitan Yaakobi; Zohar Yakhini (IEEE Trans. Commun., 2024)

Sequencing Coverage Analysis for Combinatorial DNA-Based Storage Systems. - Inbal Preuss; Ben Galili; Zohar Yakhini; Leon Anavy (IEEE Trans. Mol. Biol. Multi Scale Commun., 2024)

Privacy Preserving Feature Selection for Sparse Linear Regression. - Adi Akavia; Ben Galili; Hayim Shaul; Mor Weiss; Zohar Yakhini (Proc. Priv. Enhancing Technol., 2024)

Coding Theory and Algorithms for Emerging Technologies in Synthetic Biology (Dagstuhl Seminar 24511). - R. B.; Olgica Milenkovic; Zohar Yakhini; Yonatan Yehezkeally; Anisha Banerjee; Frederik Walter (Dagstuhl Reports, 2024)

Constrained Coding for Composite DNA: Channel Capacity and Efficient Constructions. - Tuan Thanh Nguyen; Chen Wang; Kui Cai 001; Yiwei Zhang; Zohar Yakhini (CoRR, 2025)

The Labeled Coupon Collector Problem with Random Sample Sizes and Partial Recovery. - Shoham Shimon Berrebi; Eitan Yaakobi; Zohar Yakhini; Daniella Bar-Lev (CoRR, 2025)

The Labeled Coupon Collector Problem. - Andrew Tan; Oriel Limor; Daniella Bar-Lev; Ryan Gabrys; Zohar Yakhini; Paul H. Siegel (CoRR, 2025)