Genetic Network Analysis in Light of Massively Parallel Biological Data Acquisition. - Zoltan Szallasi (Pacific Symposium on Biocomputing, 1999)

Mutual Information Analysis as a Tool to Assess the Role of Aneuploidy in the Generation of Cancer-Associated Differential Gene Expression Patterns. - Gregory T. Klus; Andrew Song; Ari Schick; Mattias Wahde; Zoltan Szallasi (Pacific Symposium on Biocomputing, 2001)

Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices. - Mattias Wahde; Gregory T. Klus; Michael L. Bittner; Yidong Chen 002; Zoltan Szallasi (Bioinform., 2002)

Is It Time to Trade "Wet-Work" for Network? - Zoltan Szallasi (AIME, 2003)

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. - Scott L. Carter; Aron C. Eklund; Brigham H. Mecham; Isaac S. Kohane; Zoltan Szallasi (BMC Bioinform., 2005)

Improving the prediction of the clinical outcome of breast cancer using evolutionary algorithms. - Mattias Wahde; Zoltan Szallasi (Soft Comput., 2006)

Jetset: selecting the optimal microarray probe set to represent a gene. - Qiyuan Li; Nicolai J. Birkbak; Balazs Györffy; Zoltan Szallasi; Aron C. Eklund (BMC Bioinform., 2011)

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response. - Qiyuan Li; Aron C. Eklund; Nicolai J. Birkbak; Christine Desmedt; Benjamin Haibe-Kains; Christos P. Sotiriou; W. Fraser Symmans; Lajos Pusztai; Søren Brunak; Andrea L. Richardson; Zoltan Szallasi (BMC Bioinform., 2011)

An Introduction to the Computational Challenges in Next Generation Sequencing. - Zoltan Szallasi (DAMDID/RCDL (Selected Papers), 2017)

Development of Genomic Based Diagnostics in Various Application Domains. - Zoltan Szallasi (DAMDID/RCDL, 2017)

Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut. - Orsolya Pipek; Dezso Ribli; János Molnár; Ádam Póti; Marcin Krzystanek; András Bodor; Gábor E. Tusnády; Zoltan Szallasi; István Csabai; David Szüts (BMC Bioinform., 2017)

Strand Orientation Bias Detector to determine the probability of FFPE sequencing artifacts. - Miklos Diossy; Zsofia Sztupinszki; Marcin Krzystanek; Judit Börcsök; Aron C. Eklund; István Csabai; Anders Gorm Pedersen; Zoltan Szallasi (Briefings Bioinform., 2021)