The impact of preprint servers in the formation of novel ideas. - Swarup Satish; Zonghai Yao; Andrew Drozdov; Boris Veytsman (SDP@EMNLP, 2020)

Zero-shot Entity Linking with Efficient Long Range Sequence Modeling. - Zonghai Yao; Liangliang Cao; Huapu Pan (EMNLP (Findings), 2020)

Improving Formality Style Transfer with Context-Aware Rule Injection. - Zonghai Yao; Hong Yu 001 (ACL/IJCNLP (1), 2021)

Named Entity Location Prediction Combining Twitter and Web. - Yinan Liu 001; Wei Shen 004; Zonghai Yao; Jianyong Wang 001; Zhenglu Yang; Xiaojie Yuan (IEEE Trans. Knowl. Data Eng., 2021)

Extracting Biomedical Factual Knowledge Using Pretrained Language Model and Electronic Health Record Context. - Zonghai Yao; Yi Cao; Zhichao Yang 001; Vijeta Deshpande; Hong Yu 001 (AMIA, 2022)

MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score. - Sunjae Kwon; Zonghai Yao; Harmon S. Jordan; David A. Levy; Brian Corner; Hong Yu 001 (EMNLP, 2022)

Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing. - Zonghai Yao; Yi Cao; Zhichao Yang 001; Hong Yu 001 (CoRR, 2022)

Multi-Label Few-Shot ICD Coding as Autoregressive Generation with Prompt. - Zhichao Yang 001; Sunjae Kwon; Zonghai Yao; Hong Yu 001 (AAAI, 2023)

UMASS_BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations? - Junda Wang; Zonghai Yao; Avijit Mitra; Samuel Osebe; Zhichao Yang 001; Hong Yu 001 (ClinicalNLP@ACL, 2023)

Revisiting the Architectures like Pointer Networks to Efficiently Improve the Next Word Distribution, Summarization Factuality, and Beyond. - Haw-Shiuan Chang; Zonghai Yao; Alolika Gon; Hong Yu 001; Andrew McCallum (ACL (Findings), 2023)

Improving Summarization with Human Edits. - Zonghai Yao; Benjamin J. Schloss; Sai P. Selvaraj (EMNLP, 2023)

Controllable Video Generation by Learning the Underlying Dynamical System with Neural ODE. - Yucheng Xu; Nanbo Li; Arushi Goel; Zijian Guo 002; Zonghai Yao; Hamidreza Kasaei 001; Mohammadreza Kasaei 001; Zhibin Li 001 (CoRR, 2023)

NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes. - Junda Wang; Zonghai Yao; Zhichao Yang 001; Huixue Zhou; Rumeng Li; Xun Wang; Yucheng Xu; Hong Yu 001 (CoRR, 2023)

EHRTutor: Enhancing Patient Understanding of Discharge Instructions. - Zihao Zhang; Zonghai Yao; Huixue Zhou; Feiyun Ouyang; Hong Yu 001 (CoRR, 2023)

Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. - Prakamya Mishra; Zonghai Yao; Shuwei Chen; Beining Wang; Rohan Mittal; Hong Yu 001 (CoRR, 2023)

SELF-EXPLAIN: Teaching Large Language Models to Reason Complex Questions by Themselves. - Jiachen Zhao; Zonghai Yao; Zhichao Yang 001; Hong Yu 001 (CoRR, 2023)

Do Physicians Know How to Prompt? The Need for Automatic Prompt Optimization Help in Clinical Note Generation. - Zonghai Yao; Ahmed Jaafar; Beining Wang; Yue Zhu; Zhichao Yang 001; Hong Yu 001 (CoRR, 2023)

EHR Interaction Between Patients and AI: NoteAid EHR Interaction. - Xiaocheng Zhang; Zonghai Yao; Hong Yu 001 (CoRR, 2023)

PaniniQA: Enhancing Patient Education Through Interactive Question Answering. - Pengshan Cai; Zonghai Yao; Fei Liu 004; Dakuo Wang; Meghan Reilly; Huixue Zhou; Lingxi Li; Yi Cao; Alok Kapoor; Adarsha Bajracharya; Dan Berlowitz; Hong Yu 001 (Trans. Assoc. Comput. Linguistics, 2023)

Automated identification of eviction status from electronic health record notes. - Zonghai Yao; Jack Tsai; Weisong Liu; David A. Levy; Emily Druhl; Joel I. Reisman; Hong Yu 001 (J. Am. Medical Informatics Assoc., 2023)

UMass-BioNLP at MEDIQA-M3G 2024: DermPrompt - A Systematic Exploration of Prompt Engineering with GPT-4V for Dermatological Diagnosis. - Parth Vashisht; Abhilasha Lodha; Mukta Maddipatla; Zonghai Yao; Avijit Mitra; Zhichao Yang 001; Sunjae Kwon; Junda Wang; Hong Yu 001 (ClinicalNLP@NAACL, 2024)

NoteChat: A Dataset of Synthetic Patient-Physician Conversations Conditioned on Clinical Notes. - Junda Wang; Zonghai Yao; Zhichao Yang 001; Huixue Zhou; Rumeng Li; Xun Wang; Yucheng Xu; Hong Yu 001 (ACL (Findings), 2024)

Do Clinicians Know How to Prompt? The Need for Automatic Prompt Optimization Help in Clinical Note Generation. - Zonghai Yao; Ahmed Jaafar; Beining Wang; Zhichao Yang 001; Hong Yu 001 (BioNLP@ACL, 2024)

LocalTweets to LocalHealth: A Mental Health Surveillance Framework Based on Twitter Data. - Vijeta Deshpande; Minhwa Lee; Zonghai Yao; Zihao Zhang; Jason Brian Gibbons; Hong Yu 001 (LREC/COLING, 2024)

SYNFAC-EDIT: Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. - Prakamya Mishra; Zonghai Yao; Parth Vashisht; Feiyun Ouyang; Beining Wang; Vidhi Dhaval Mody; Hong Yu 001 (EMNLP, 2024)

README: Bridging Medical Jargon and Lay Understanding for Patient Education through Data-Centric NLP. - Zonghai Yao; Nandyala Siddharth Kantu; Guanghao Wei; Hieu Tran; Zhangqi Duan; Sunjae Kwon; Zhichao Yang 001; README annotation team; Hong Yu 001 (EMNLP (Findings), 2024)

Large Language Models are In-context Teachers for Knowledge Reasoning. - Jiachen Zhao; Zonghai Yao; Zhichao Yang 001; Hong Yu 001 (EMNLP (Findings), 2024)

TiV-ODE: A Neural ODE-based Approach for Controllable Video Generation From Text-Image Pairs. - Yucheng Xu; Nanbo Li; Arushi Goel; Zonghai Yao; Zijian Guo 002; Hamidreza Kasaei 001; Mohammadreza Kasaei 001; Zhibin Li 001 (ICRA, 2024)

JMLR: Joint Medical LLM and Retrieval Training for Enhancing Reasoning and Professional Question Answering Capability. - Junda Wang; Zhichao Yang 001; Zonghai Yao; Hong Yu 001 (CoRR, 2024)

ReadCtrl: Personalizing text generation with readability-controlled instruction learning. - Hieu Tran; Zonghai Yao; Lingxi Li; Hong Yu 001 (CoRR, 2024)

Large Language Model-based Role-Playing for Personalized Medical Jargon Extraction. - Jung Hoon Lim; Sunjae Kwon; Zonghai Yao; John P. Lalor; Hong Yu 001 (CoRR, 2024)

MedQA-CS: Benchmarking Large Language Models Clinical Skills Using an AI-SCE Framework. - Zonghai Yao; Zihao Zhang; Chaolong Tang; Xingyu Bian; Youxia Zhao; Zhichao Yang 001; Junda Wang; Huixue Zhou; Won Seok Jang; Feiyun Ouyang; Hong Yu 001 (CoRR, 2024)

CS4: Measuring the Creativity of Large Language Models Automatically by Controlling the Number of Story-Writing Constraints. - Anirudh Atmakuru; Jatin Nainani; Rohith Siddhartha Reddy Bheemreddy; Anirudh Lakkaraju; Zonghai Yao; Hamed Zamani; Haw-Shiuan Chang (CoRR, 2024)

Blocks Architecture (BloArk): Efficient, Cost-Effective, and Incremental Dataset Architecture for Wikipedia Revision History. - Lingxi Li; Zonghai Yao; Sunjae Kwon; Hong Yu 001 (CoRR, 2024)

RiTeK: A Dataset for Large Language Models Complex Reasoning over Textual Knowledge Graphs. - Jiatan Huang; Mingchen Li; Zonghai Yao; Zhichao Yang 001; Yongkang Xiao; Feiyun Ouyang; Xiaohan Li; Shuo Han; Hong Yu 001 (CoRR, 2024)

RARE: Retrieval-Augmented Reasoning Enhancement for Large Language Models. - Hieu Tran; Zonghai Yao; Junda Wang; Yifan Zhang; Zhichao Yang 001; Hong Yu 001 (CoRR, 2024)

BioInstruct: instruction tuning of large language models for biomedical natural language processing. - Hieu Tran; Zhichao Yang 001; Zonghai Yao; Hong Yu 001 (J. Am. Medical Informatics Assoc., 2024)

RARE: Retrieval-Augmented Reasoning Enhancement for Large Language Models. - Hieu Tran; Zonghai Yao; Zhichao Yang 001; Junda Wang; Yifan Zhang; Shuo Han; Feiyun Ouyang; Hong Yu 001 (ACL (1), 2025)

MCQG-SRefine: Multiple Choice Question Generation and Evaluation with Iterative Self-Critique, Correction, and Comparison Feedback. - Zonghai Yao; Aditya Parashar; Huixue Zhou; Won Seok Jang; Feiyun Ouyang; Zhichao Yang 001; Hong Yu 001 (NAACL (Long Papers), 2025)

Enhancing LLMs for Identifying and Prioritizing Important Medical Jargons from Electronic Health Record Notes Utilizing Data Augmentation. - Won Seok Jang; Sharmin Sultana; Zonghai Yao; Hieu Tran; Zhichao Yang 001; Sunjae Kwon; Hong Yu 001 (CoRR, 2025)

MedReadCtrl: Personalizing medical text generation with readability-controlled instruction learning. - Hieu Tran; Zonghai Yao; Won Seok Jang; Sharmin Sultana; Allen Chang; Yuan Zhang; Hong Yu 001 (CoRR, 2025)

SynthEHR-Eviction: Enhancing Eviction SDoH Detection with LLM-Augmented Synthetic EHR Data. - Zonghai Yao; Youxia Zhao; Avijit Mitra; David A. Levy; Emily Druhl; Jack Tsai; Hong Yu 001 (CoRR, 2025)