TAGster: efficient selection of LD tag SNPs in single or multiple populations. - Zongli Xu; Norman L. Kaplan; Jack A. Taylor (Bioinform., 2007)

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies. - Zongli Xu; Jack A. Taylor (Nucleic Acids Res., 2009)

RCP: a novel probe design bias correction method for Illumina Methylation BeadChip. - Liang Niu; Zongli Xu; Jack A. Taylor (Bioinform., 2016)

oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine in paired bisulfite and oxidative bisulfite treated DNA. - Zongli Xu; Jack A. Taylor; Yuet-Kin Leung; Shuk-Mei Ho; Liang Niu (Bioinform., 2016)

ipDMR: identification of differentially methylated regions with interval P-values. - Zongli Xu; Changchun Xie; Jack A. Taylor; Liang Niu (Bioinform., 2021)