The role of long-range interactions in defining the secondary structure of proteins is overestimated. - András Fiser; Zsuzsanna Dosztányi; István Simon (Comput. Appl. Biosci., 1997)

Amino acid similarity matrices based on force fields. - Zsuzsanna Dosztányi; Andrew Ernest Torda (Bioinform., 2001)

SCide: Identification of Stabilization Centers in Proteins. - Zsuzsanna Dosztányi; Csaba Magyar; Gábor E. Tusnády; István Simon (Bioinform., 2003)

Servers for sequence-structure relationship analysis and prediction. - Zsuzsanna Dosztányi; Csaba Magyar; Gábor E. Tusnády; Miklós Cserzo; András Fiser; István Simon (Nucleic Acids Res., 2003)

Transmembrane proteins in the Protein Data Bank: identification and classification. - Gábor E. Tusnády; Zsuzsanna Dosztányi; István Simon (Bioinform., 2004)

Noncovalent Cross-links in Context with Other Structural and Functional Elements of Proteins. - Éva Tüdos; András Fiser; Ágnes Simon; Zsuzsanna Dosztányi; Mónika Fuxreiter; Csaba Magyar; István Simon (J. Chem. Inf. Model., 2004)

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. - Zsuzsanna Dosztányi; Veronika Csizmok; Peter Tompa; István Simon (Bioinform., 2005)

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates. - Gábor E. Tusnády; Zsuzsanna Dosztányi; István Simon (Bioinform., 2005)

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank. - Gábor E. Tusnády; Zsuzsanna Dosztányi; István Simon (Nucleic Acids Res., 2005)

ANCHOR: web server for predicting protein binding regions in disordered proteins. - Zsuzsanna Dosztányi; Bálint Mészáros; István Simon (Bioinform., 2009)

Prediction of Protein Binding Regions in Disordered Proteins. - Bálint Mészáros; István Simon; Zsuzsanna Dosztányi (PLoS Comput. Biol., 2009)

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins. - Zsuzsanna Dosztányi; Bálint Mészáros; István Simon (Briefings Bioinform., 2010)

Proteins with Complex Architecture as Potential Targets for Drug Design: A Case Study of Mycobacterium tuberculosis. - Bálint Mészáros; Judit Tóth; Beáta G. Vértessy; Zsuzsanna Dosztányi; István Simon (PLoS Comput. Biol., 2011)

D2P2: database of disordered protein predictions. - Matt E. Oates; Pedro Romero; Takashi Ishida 002; Mohamed F. Ghalwash; Marcin J. Mizianty; Bin Xue; Zsuzsanna Dosztányi; Vladimir N. Uversky; Zoran Obradovic; Lukasz A. Kurgan; A. Keith Dunker; Julian Gough (Nucleic Acids Res., 2013)

Predicting functional sites in disordered proteins - implications in disease. - Bálint Mészáros; István Simon; Zsuzsanna Dosztányi (IWBBIO, 2014)

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins. - Marco Necci; Damiano Piovesan; Zsuzsanna Dosztányi; Silvio C. E. Tosatto (Bioinform., 2017)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

DisProt 7.0: a major update of the database of disordered proteins. - Damiano Piovesan; Francesco Tabaro; Ivan Micetic; Marco Necci; Federica Quaglia; Christopher J. Oldfield; Maria Cristina Aspromonte; Norman E. Davey; Radoslav Davidovic; Zsuzsanna Dosztányi; Arne Elofsson; Alessandra Gasparini; et al. (Nucleic Acids Res., 2017)

Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway. - Gábor Erdös 002; Tamás Szaniszló; Mátyás Pajkos; Borbála Hajdu-Soltész; Bence Kiss; Gábor Pál; László Nyitray; Zsuzsanna Dosztányi (PLoS Comput. Biol., 2017)

A comprehensive assessment of long intrinsic protein disorder from the DisProt database. - Marco Necci; Damiano Piovesan; Zsuzsanna Dosztányi; Peter Tompa; Silvio C. E. Tosatto (Bioinform., 2018)

DIBS: a repository of disordered binding sites mediating interactions with ordered proteins. - Éva Schád; Erzsébet Fichó; Rita Pancsa; István Simon; Zsuzsanna Dosztányi; Bálint Mészáros (Bioinform., 2018)

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding. - Bálint Mészáros; Gábor Erdös 002; Zsuzsanna Dosztányi (Nucleic Acids Res., 2018)

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. - Damiano Piovesan; Francesco Tabaro; Lisanna Paladin; Marco Necci; Ivan Micetic; Carlo Camilloni; Norman E. Davey; Zsuzsanna Dosztányi; Bálint Mészáros; Alexander Miguel Monzon; Gustavo D. Parisi; Éva Schád; et al. (Nucleic Acids Res., 2018)

Disentangling the complexity of low complexity proteins. - Pablo Mier; Lisanna Paladin; Stella Tamana; Sophia Petrosian; Borbála Hajdu-Soltész; Annika Urbanek; Aleksandra Gruca; Dariusz Plewczynski; Marcin Grynberg; Pau Bernadó; Zoltán Gáspári; Christos A. Ouzounis; et al. (Briefings Bioinform., 2020)

DisProt: intrinsic protein disorder annotation in 2020. - András Hatos; Borbála Hajdu-Soltész; Alexander Miguel Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykaç Fas; Claudio Bassot; Guillermo I. Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucía B. Chemes; Norman E. Davey; et al. (Nucleic Acids Res., 2020)

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. - Patryk Jarnot; Joanna Ziemska-Legiecka; Laszlo Dobson; Matthew Merski; Pablo Mier; Miguel A. Andrade-Navarro; John M. Hancock; Zsuzsanna Dosztányi; Lisanna Paladin; Marco Necci; Damiano Piovesan; Silvio C. E. Tosatto; et al. (Nucleic Acids Res., 2020)

PhaSePro: the database of proteins driving liquid?liquid phase separation. - Bálint Mészáros; Gábor Erdös 002; Beáta Szabó; Éva Schád; Ágnes Tantos; Rawan Abukhairan; Tamás Horváth 005; Nikoletta Murvai; Orsolya P. Kovács; Márton Kovács; Silvio C. E. Tosatto; Peter Tompa; et al. (Nucleic Acids Res., 2020)

MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins. - Marco Necci; Damiano Piovesan; Damiano Clementel; Zsuzsanna Dosztányi; Silvio C. E. Tosatto (Bioinform., 2021)

The MemMoRF database for recognizing disordered protein regions interacting with cellular membranes. - Georgina Csizmadia; Gábor Erdös 002; Hedvig Tordai; Rita Padányi; Silvio C. E. Tosatto; Zsuzsanna Dosztányi; Tamás Hegedüs (Nucleic Acids Res., 2021)

IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation. - Gábor Erdös 002; Mátyás Pajkos; Zsuzsanna Dosztányi (Nucleic Acids Res., 2021)

MobiDB: intrinsically disordered proteins in 2021. - Damiano Piovesan; Marco Necci; Nahuel Escobedo; Alexander Miguel Monzon; András Hatos; Ivan Micetic; Federica Quaglia; Lisanna Paladin; Pathmanaban Ramasamy; Zsuzsanna Dosztányi; Wim F. Vranken; Norman E. Davey; et al. (Nucleic Acids Res., 2021)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)