Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes. - Zuguang Gu; Jialin Liu; Kunming Cao; Junfeng Zhang; Jin Wang (BMC Syst. Biol., 2012)

Gene regulation is governed by a core network in hepatocellular carcinoma. - Zuguang Gu; Chenyu Zhang; Jin Wang (BMC Syst. Biol., 2012)

CePa: an R package for finding significant pathways weighted by multiple network centralities. - Zuguang Gu; Jin Wang (Bioinform., 2013)

circlize implements and enhances circular visualization in R. - Zuguang Gu; Lei Gu; Roland Eils; Matthias Schlesner; Benedikt Brors (Bioinform., 2014)

HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data. - Zuguang Gu; Roland Eils; Matthias Schlesner (Bioinform., 2016)

Complex heatmaps reveal patterns and correlations in multidimensional genomic data. - Zuguang Gu; Roland Eils; Matthias Schlesner (Bioinform., 2016)

gtrellis: an R/Bioconductor package for making genome-level Trellis graphics. - Zuguang Gu; Roland Eils; Matthias Schlesner (BMC Bioinform., 2016)

Improve consensus partitioning via a hierarchical procedure. - Zuguang Gu; Daniel Hübschmann (Briefings Bioinform., 2022)

spiralize: an R package for visualizing data on spirals. - Zuguang Gu; Daniel Hübschmann (Bioinform., 2022)

Make Interactive Complex Heatmaps in R. - Zuguang Gu; Daniel Hübschmann (Bioinform., 2022)

Pkgndep: a tool for analyzing dependency heaviness of R packages. - Zuguang Gu; Daniel Hübschmann (Bioinform., 2022)

simplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results. - Zuguang Gu; Daniel Hübschmann (Genom. Proteom. Bioinform., 2023)

rGREAT: an R/bioconductor package for functional enrichment on genomic regions. - Zuguang Gu; Daniel Hübschmann (Bioinform., 2023)

On the dependency heaviness of CRAN/Bioconductor ecosystem. - Zuguang Gu (J. Syst. Softw., 2023)

Construction, Transformation and Structures of 2x2 Space-Filling Curves. - Zuguang Gu (CoRR, 2024)

Two separated worlds: On the preference of influence in life science and biomedical research. - Zuguang Gu (J. Informetrics, 2025)