GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis. - Damla Senol Cali; Gurpreet S. Kalsi; Zülal Bingöl; Can Firtina; Lavanya Subramanian; Jeremie S. Kim; Rachata Ausavarungnirun; Mohammed Alser; Juan Gómez-Luna; Amirali Boroumand; Anant Nori; Allison Scibisz; et al. (MICRO, 2020)

Accelerating Genome Analysis: A Primer on an Ongoing Journey. - Mohammed Alser; Zülal Bingöl; Damla Senol Cali; Jeremie S. Kim; Saugata Ghose; Can Alkan; Onur Mutlu (IEEE Micro, 2020)

SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping. - Damla Senol Cali; Konstantinos Kanellopoulos; Joël Lindegger; Zülal Bingöl; Gurpreet S. Kalsi; Ziyi Zuo; Can Firtina; Meryem Banu Cavlak; Jeremie S. Kim; Nika Mansouri-Ghiasi; Gagandeep Singh 002; Juan Gómez-Luna; et al. (ISCA, 2022)

Amplifying Main Memory-Based Timing Covert and Side Channels using Processing-in-Memory Operations. - Konstantinos Kanellopoulos; F. Nisa Bostanci; Ataberk Olgun; Abdullah Giray Yaglikçi; Ismail Emir Yuksel; Nika Mansouri-Ghiasi; Zülal Bingöl; Mohammad Sadrosadati; Onur Mutlu (CoRR, 2024)

GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping. - Zülal Bingöl; Mohammed Alser; Onur Mutlu; Ozcan Ozturk 001; Can Alkan (IEEE Trans. Computers, 2024)

Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory. - F. Nisa Bostanci; Konstantinos Kanellopoulos; Ataberk Olgun; A. Giray Yaglikçi; Ismail Emir Yüksel; Nika Mansouri-Ghiasi; Zülal Bingöl; Mohammad Sadrosadati; Onur Mutlu (DSN, 2025)