KFU at CLEF eHealth 2017 Task 1: ICD-10 Coding of English Death Certificates with Recurrent Neural Networks. - Zulfat Miftahutdinov; Elena Tutubalina (CLEF (Working Notes), 2017)

Deep Learning for ICD Coding: Looking for Medical Concepts in Clinical Documents in English and in French. - Zulfat Miftahutdinov; Elena Tutubalina (CLEF, 2017)

An Encoder-Decoder Model for ICD-10 Coding of Death Certificates. - Elena Tutubalina; Zulfat Miftahutdinov (CoRR, 2017)

Sequence Learning with RNNs for Medical Concept Normalization in User-Generated Texts. - Elena Tutubalina; Zulfat Miftahutdinov; Sergey I. Nikolenko; Valentin Malykh (CoRR, 2018)

Medical concept normalization in social media posts with recurrent neural networks. - Elena Tutubalina; Zulfat Miftahutdinov; Sergey I. Nikolenko; Valentin Malykh (J. Biomed. Informatics, 2018)

Deep Neural Models for Medical Concept Normalization in User-Generated Texts. - Zulfat Miftahutdinov; Elena Tutubalina (ACL (2), 2019)

KFU NLP Team at SMM4H 2019 Tasks: Want to Extract Adverse Drugs Reactions from Tweets? BERT to The Rescue. - Zulfat Miftahutdinov; Ilseyar Alimova; Elena Tutubalina (SMM4H@ACL, 2019)

CommentsRadar: Dive into Unique Data on All Comments on the Web. - Sergey I. Nikolenko; Elena Tutubalina; Zulfat Miftahutdinov; Eugene Beloded (CoRR, 2019)

Fair Evaluation in Concept Normalization: a Large-scale Comparative Analysis for BERT-based Models. - Elena Tutubalina; Artur Kadurin; Zulfat Miftahutdinov (COLING, 2020)

On Biomedical Named Entity Recognition: Experiments in Interlingual Transfer for Clinical and Social Media Texts. - Zulfat Miftahutdinov; Ilseyar Alimova; Elena Tutubalina (ECIR (2), 2020)

Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. - Ari Z. Klein; Ilseyar Alimova; Ivan Flores; Arjun Magge; Zulfat Miftahutdinov; Anne-Lyse Minard; Karen O'Connor; Abeed Sarker; Elena Tutubalina; Davy Weissenbacher; Graciela Gonzalez-Hernandez (SMM4H@COLING, 2020)

KFU NLP Team at SMM4H 2020 Tasks: Cross-lingual Transfer Learning with Pretrained Language Models for Drug Reactions. - Zulfat Miftahutdinov; Andrey Sakhovskiy; Elena Tutubalina (SMM4H@COLING, 2020)

Drug and Disease Interpretation Learning with Biomedical Entity Representation Transformer. - Zulfat Miftahutdinov; Artur Kadurin; Roman Kudrin; Elena Tutubalina (ECIR (1), 2021)

Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. - Arjun Magge; Ari Z. Klein; Antonio Miranda-Escalada; Mohammed Ali Al-Garadi; Ilseyar Alimova; Zulfat Miftahutdinov; Eulàlia Farré; Salvador Lima-López; Ivan Flores; Karen O'Connor; Davy Weissenbacher; Elena Tutubalina; et al. (SMM4H@NAACL-HLT, 2021)

KFU NLP Team at SMM4H 2021 Tasks: Cross-lingual and Cross-modal BERT-based Models for Adverse Drug Effects. - Andrey Sakhovskiy; Zulfat Miftahutdinov; Elena Tutubalina (SMM4H@NAACL-HLT, 2021)

Medical concept normalization in clinical trials with drug and disease representation learning. - Zulfat Miftahutdinov; Artur Kadurin; Roman Kudrin; Elena Tutubalina (Bioinform., 2021)

The Russian Drug Reaction Corpus and neural models for drug reactions and effectiveness detection in user reviews. - Elena Tutubalina; Ilseyar Alimova; Zulfat Miftahutdinov; Andrey Sakhovskiy; Valentin Malykh; Sergey I. Nikolenko (Bioinform., 2021)

DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. - Arjun Magge; Elena Tutubalina; Zulfat Miftahutdinov; Ilseyar Alimova; Anne Dirkson; Suzan Verberne; Davy Weissenbacher; Graciela Gonzalez-Hernandez (J. Am. Medical Informatics Assoc., 2021)

RuCCoN: Clinical Concept Normalization in Russian. - Alexandr Nesterov; Galina Zubkova; Zulfat Miftahutdinov; Vladimir Kokh; Elena Tutubalina; Artem Shelmanov; Anton Alekseev 001; Manvel Avetisian; Andrey Chertok; Sergey I. Nikolenko (ACL (Findings), 2022)

A Comprehensive Evaluation of Biomedical Entity-centric Search. - Elena Tutubalina; Zulfat Miftahutdinov; Vladimir Muravlev; Anastasia Shneyderman (EMNLP (Industry Track), 2022)

Medical Crossing: a Cross-lingual Evaluation of Clinical Entity Linking. - Anton Alekseev 001; Zulfat Miftahutdinov; Elena Tutubalina; Artem Shelmanov; Vladimir Ivanov 001; Vladimir Kokh; Alexandr Nesterov; Manvel Avetisian; Andrey Chertok; Sergey I. Nikolenko (LREC, 2022)

nach0: Multimodal Natural and Chemical Languages Foundation Model. - Micha Livne; Zulfat Miftahutdinov; Elena Tutubalina; Maksim Kuznetsov; Daniil Polykovskiy; Annika Brundyn; Aastha Jhunjhunwala; Anthony Costa; Alex Aliper; Alex Zhavoronkov (CoRR, 2023)

nach0-pc: Multi-task Language Model with Molecular Point Cloud Encoder. - Maksim Kuznetsov; Airat Valiev; Alex Aliper; Daniil Polykovskiy; Elena Tutubalina; Rim Shayakhmetov; Zulfat Miftahutdinov (AAAI, 2025)