CLI-mate: an interface generator for command line programs. - Zuotian Tatum; Johan T. den Dunnen; Jeroen F. J. Laros (SWAT4LS, 2011)

Preserving sequence annotations across reference sequences. - Zuotian Tatum; Marco Roos; Andrew P. Gibson; Peter E. M. Taschner; Mark Thompson 002; Erik A. Schultes; Jeroen F. J. Laros (J. Biomed. Semant., 2014)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. - Eelke van der Horst; Rajaram Kaliyaperumal; Zuotian Tatum; Mark Thompson 002; Erik A. Schultes; Eleni Mina; Ivo Fokkema; Johan T. den Dunnen; Marco Roos; Jeroen F. J. Laros; Barend Mons; Kristina M. Hettne; et al. (SWAT4LS, 2015)

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. - Eleni Mina; Mark Thompson 002; Rajaram Kaliyaperumal; Jun Zhao 003; Eelke van der Horst; Zuotian Tatum; Kristina M. Hettne; Erik A. Schultes; Barend Mons; Marco Roos (J. Biomed. Semant., 2015)