Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data. - Zuyi Huang; Fatih Senocak; Arul Jayaraman; Juergen Hahn (BMC Syst. Biol., 2008)

Solution of inverse problems for obtaining protein concentrations from fluorescent microscopy images. - Zuyi Huang; Fatih Senocak; Arul Jayaraman; Juergen Hahn (ACC, 2009)

Derivation of simplified signal transduction pathway models: Application to IL-6 signaling. - Zuyi Huang; Yunfei Chu; Juergen Hahn (ACC, 2010)

Gene target identification for biofilm-associated pathogens: an application to pseudomonas aeruginosa. - Zhaobin Xu; Xin Fang; Thomas K. Wood; Zuyi Huang (ACC, 2013)