Hongru Shen

According to our database, Hongru Shen authored at least 5 papers between 2022 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2025

A deep learning model for characterizing protein-RNA interactions from sequences at single-base resolution.

Xilin Shen, Yayan Hou, Xueer Wang, Chunyong Zhang, Jilei Liu, Hongru Shen, Wei Wang, Yichen Yang, Meng Yang, Yang Li, Jin Zhang, Yan Sun, Kexin Chen, Lei Shi, Xiangchun Li

Patterns, 2025

2024

Language model enables end-to-end accurate detection of cancer from cell-free DNA.

Hongru Shen, Jilei Liu, Kexin Chen, Xiangchun Li

Briefings Bioinform., 2024

Large language model produces high accurate diagnosis of cancer from end-motif profiles of cell-free DNA.

Jilei Liu, Hongru Shen, Kexin Chen, Xiangchun Li

Briefings Bioinform., 2024

2022

Scalable batch-correction approach for integrating large-scale single-cell transcriptomes.

Xilin Shen, Hongru Shen, Dan Wu, Mengyao Feng, Jiani Hu, Jilei Liu, Yichen Yang, Meng Yang, Yang Li, Lei Shi, Kexin Chen, Xiangchun Li

Briefings Bioinform., 2022

A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings.

Hongru Shen, Xilin Shen, Mengyao Feng, Dan Wu, Chao Zhang, Yichen Yang, Meng Yang, Jiani Hu, Jilei Liu, Wei Wang, Yang Li, Qiang Zhang, Jilong Yang, Kexin Chen, Xiangchun Li

Briefings Bioinform., 2022