Kathryn E. Holt

Orcid: 0000-0003-3949-2471

According to our database1, Kathryn E. Holt authored at least 9 papers between 2009 and 2023.

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Bibliography

2023
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing.
PLoS Comput. Biol., March, 2023

2022
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
PLoS Comput. Biol., 2022

2019
FastSpar: rapid and scalable correlation estimation for compositional data.
Bioinform., 2019

2018
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.
PLoS Comput. Biol., 2018

2017
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput. Biol., 2017

2015
A platform for leveraging next generation sequencing for routine microbiology and public health use.
Health Inf. Sci. Syst., 2015

Bandage: interactive visualization of <i>de novo</i> genome assemblies.
Bioinform., 2015

2011
Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2009
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
Bioinform., 2009


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