Olli T. Pentikäinen

According to our database, Olli T. Pentikäinen authored at least 13 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of five.

2024

Building shape-focused pharmacophore models for effective docking screening.

Paola Moyano-Gómez, Jukka V. Lehtonen, Olli T. Pentikäinen, Pekka A. Postila

J. Cheminformatics, December, 2024

Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1.

Aliaa E. Ali, Li-Li Li, Michael J. Courtney, Olli T. Pentikäinen, Pekka A. Postila

Briefings Bioinform., November, 2024

2022

Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool.

Sakari Lätti, Sanna P. Niinivehmas, Olli T. Pentikäinen

J. Chem. Inf. Model., 2022

Optimization of Cavity-Based Negative Images to Boost Docking Enrichment in Virtual Screening.

Sami T. Kurkinen, Jukka V. Lehtonen, Olli T. Pentikäinen, Pekka A. Postila

J. Chem. Inf. Model., 2022

2021

Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents.

Elmeri M. Jokinen, Krishnasamy Gopinath, Sami T. Kurkinen, Olli T. Pentikäinen

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2019

Getting Docking into Shape Using Negative Image-Based Rescoring.

Sami T. Kurkinen, Sakari Lätti, Olli T. Pentikäinen, Pekka A. Postila

J. Chem. Inf. Model., 2019

2016

Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization.

Sakari Lätti, Sanna P. Niinivehmas, Olli T. Pentikäinen

J. Cheminformatics, 2016

2015

Ultrafast protein structure-based virtual screening with Panther.

Sanna P. Niinivehmas, Kari Salokas, Sakari Lätti, Hannu Raunio, Olli T. Pentikäinen

J. Comput. Aided Mol. Des., 2015

2013

MMGBSA As a Tool To Understand the Binding Affinities of Filamin-Peptide Interactions.

Mikko Ylilauri, Olli T. Pentikäinen

J. Chem. Inf. Model., 2013

2011

Full and Partial Agonism of Ionotropic Glutamate Receptors Indicated by Molecular Dynamics Simulations.

Pekka A. Postila, Mikko Ylilauri, Olli T. Pentikäinen

J. Chem. Inf. Model., 2011

Comparison of Virtual High-Throughput Screening Methods for the Identification of Phosphodiesterase-5 Inhibitors.

Sanna P. Niinivehmas, Salla I. Virtanen, Jukka V. Lehtonen, Pekka A. Postila, Olli T. Pentikäinen

J. Chem. Inf. Model., 2011

2010

Efficient Virtual Screening Using Multiple Protein Conformations Described as Negative Images of the Ligand-Binding Site.

Salla I. Virtanen, Olli T. Pentikäinen

J. Chem. Inf. Model., 2010

2004

BODIL: a molecular modeling environment for structure-function analysis and drug design.

Jukka V. Lehtonen, Dan-Johan Still, Ville-Veikko Rantanen, Jan Ekholm, Dag Björklund, Zuhair Iftikhar, Mikko Huhtala, Susanna Repo, Antti Jussila, Jussi Jaakkola, Olli T. Pentikäinen, Tommi H. Nyrönen, Tiina Salminen, Mats Gyllenberg, Mark S. Johnson

J. Comput. Aided Mol. Des., 2004