Shizuka Uchida

According to our database, Shizuka Uchida authored at least 11 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

CrohnDB: A Web Database for Expression Profiling of Protein-Coding and Long Non-Coding RNA Genes in Crohn Disease.

Rebecca Distefano, Mirolyuba Ilieva, Jens Hedelund Madsen, Shizuka Uchida

Comput., June, 2023

2018

DRETools: A tool-suite for differential RNA editing detection.

Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida

F1000Research, 2018

Increasing workflow development speed and reproducibility with Vectools.

Tyler Weirick, Raphael Rene Müller, Shizuka Uchida

F1000Research, 2018

Logic programming to infer complex RNA expression patterns from RNA-seq data.

Tyler Weirick, Giuseppe Militello, Yuliya Ponomareva, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida

Briefings Bioinform., 2018

2017

Resolving the problem of multiple accessions of the same transcript deposited across various public databases.

Tyler Weirick, David John, Shizuka Uchida

Briefings Bioinform., 2017

Screening and validation of lncRNAs and circRNAs as miRNA sponges.

Giuseppe Militello, Tyler Weirick, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida

Briefings Bioinform., 2017

RNAEditor: easy detection of RNA editing events and the introduction of editing islands.

David John, Tyler Weirick, Stefanie Dimmeler, Shizuka Uchida

Briefings Bioinform., 2017

2016

The identification and characterization of novel transcripts from RNA-seq data.

Tyler Weirick, Giuseppe Militello, Raphael Rene Müller, David John, Stefanie Dimmeler, Shizuka Uchida

Briefings Bioinform., 2016

2015

C-It-Loci: a knowledge database for tissue-enriched loci.

Tyler Weirick, David John, Stefanie Dimmeler, Shizuka Uchida

Bioinform., 2015

2010

C-It: a knowledge database for tissue-enriched genes.

Pascal Gellert, Katharina Jenniches, Thomas Braun, Shizuka Uchida

Bioinform., 2010

2009

Exon Array Analyzer: a web interface for Affymetrix exon array analysis.

Pascal Gellert, Shizuka Uchida, Thomas Braun

Bioinform., 2009