Stephen Nayfach

According to our database, Stephen Nayfach authored at least 7 papers between 2015 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.

Antonio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Simon Roux

Nucleic Acids Res., January, 2023

MIDAS2: Metagenomic Intra-species Diversity Analysis System.

Chunyu Zhao, Boris Dimitrov, Miriam Goldman, Stephen Nayfach, Katherine S. Pollard

Bioinform., January, 2023

2021

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Simon Roux, David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. B. K. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides

Nucleic Acids Res., 2021

2019

New insights from uncultivated genomes of the global human gut microbiome.

Stephen Nayfach, Zhou Jason Shi, Rekha Seshadri, Katherine S. Pollard, Nikos Kyrpides

Nat., 2019

2018

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization.

Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard

PLoS Comput. Biol., 2018

2015

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Stephen Nayfach, Patrick H. Bradley, Stacia K. Wyman, Timothy J. Laurent, Alexander G. Williams, Jonathan A. Eisen, Katherine S. Pollard, Thomas J. Sharpton

PLoS Comput. Biol., 2015

MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome.

Stephen Nayfach, Michael A. Fischbach, Katherine S. Pollard

Bioinform., 2015