Tomer Shlomi

According to our database, Tomer Shlomi authored at least 20 papers between 2005 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2013

An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments.

Naama Tepper, Tomer Shlomi

Bioinform., 2013

2012

Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters.

Roi Adadi, Benjamin Volkmer, Ron Milo, Matthias Heinemann, Tomer Shlomi

PLoS Comput. Biol., 2012

2011

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect.

Tomer Shlomi, Tomer Benyamini, Eyal Gottlieb, Roded Sharan, Eytan Ruppin

PLoS Comput. Biol., 2011

2010

Associating Genes and Protein Complexes with Disease via Network Propagation.

Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan

PLoS Comput. Biol., 2010

iMAT: an integrative metabolic analysis tool.

Hadas Zur, Eytan Ruppin, Tomer Shlomi

Bioinform., 2010

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.

Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi

Bioinform., 2010

Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways.

Naama Tepper, Tomer Shlomi

Bioinform., 2010

Pathway-Based Functional Analysis of Metagenomes.

Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi

Proceedings of the Research in Computational Molecular Biology, 2010

2009

Network-based prediction of metabolic enzymes' subcellular localization.

Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi

Bioinform., 2009

2008

Functional models and building blocks of metabolic and protein networks

Tomer Shlomi

PhD thesis, 2008

2007

Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network.

Ofer Meshi, Tomer Shlomi, Eytan Ruppin

BMC Syst. Biol., 2007

Constraint-based functional similarity of metabolic genes: going beyond network topology.

Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter

Bioinform., 2007

Pepitope: epitope mapping from affinity-selected peptides.

Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko

Bioinform., 2007

QNet: A Tool for Querying Protein Interaction Networks.

Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan

Proceedings of the Research in Computational Molecular Biology, 2007

SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.

Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States.

Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin

PLoS Comput. Biol., 2006

A direct comparison of protein interaction confidence assignment schemes.

Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker

BMC Bioinform., 2006

QPath: a method for querying pathways in a protein-protein interaction network.

Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan

BMC Bioinform., 2006

Flux-Based <i>vs.</i> Topology-Based Similarity of Metabolic Genes.

Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

Comparison of Protein-Protein Interaction Confidence Assignment Schemes.

Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker

Proceedings of the Systems Biology and Regulatory Genomics, 2005