Yang-Chi-Dung Lin

According to our database, Yang-Chi-Dung Lin authored at least 8 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

SCOPE-DTI: Semi-Inductive Dataset Construction and Framework Optimization for Practical Usability Enhancement in Deep Learning-Based Drug Target Interaction Prediction.

Yigang Chen, Xiang Ji, Ziyue Zhang, Yuming Zhou, Yang-Chi-Dung Lin, Hsi-Yuan Huang, Tao Zhang, Yi Lai, Ke Chen, Chang Su, Xingqiao Lin, Zihao Zhu, Yanggyi Zhang, Kangping Wei, Jiehui Fu, Yixian Huang, Shi-Dong Cui, Shih-Chung Yen, Ariel Warshel, Hsien-Da Huang

CoRR, March, 2025

2024

DrugRepoBank: a comprehensive database and discovery platform for accelerating drug repositioning.

Yixian Huang, Danhong Dong, Wenyang Zhang, Ruiting Wang, Yang-Chi-Dung Lin, Hua-Li Zuo, Hsi-Yuan Huang, Hsien-Da Huang

Database J. Biol. Databases Curation, January, 2024

DeepDrugmiR: a two-stage deep learning method for inferring small molecules' regulatory effects on microRNA expression.

Yixian Huang, Huacong Wu, Ying Cai, Danhong Dong, Sicong Yu, Yigang Chen, Zihao Zhu, Yang-Chi-Dung Lin, Hsien-Da Huang, Hsi-Yuan Huang

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023

Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis.

Yigang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang

Briefings Bioinform., May, 2023

2022

miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions.

Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shi-Dong Cui, Yixian Huang, Yun Tang, Jia-Tong Xu, Jiayang Bao, Yulin Li, Jia Wen, Hua-Li Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yue-Yang Xie, Zihao Zhu, Xiao-Xuan Cai, Xin-Yi Chen, Lantian Yao, Yigang Chen, Yijun Luo, Shupeng Luxu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang

Nucleic Acids Res., 2022

2021

MethHC 2.0: information repository of DNA methylation and gene expression in human cancer.

Hsi-Yuan Huang, Jing Li, Yun Tang, Yixian Huang, Yigang Chen, Yue-Yang Xie, Zhe-Yuan Zhou, Xin-Yi Chen, Si-Yuan Ding, Meng-Fan Luo, Chen-Nan Jin, Le-Shan Zhao, Jia-Tong Xu, Ying Zhou, Yang-Chi-Dung Lin, Hsiao-Chin Hong, Hua-Li Zuo, Si-Yao Hu, Pei-Yi Xu, Xin Li, Hsien-Da Huang

Nucleic Acids Res., 2021

2020

miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database.

Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yigang Chen, Chen-Nan Jin, Yuan Yu, Jia-Tong Xu, Yue-Ming Li, Xiao-Xuan Cai, Zhen-Yu Zhou, Xiao-Hang Chen, Yuan-Yuan Pei, Liang Hu, Jin-Jiang Su, Shi-Dong Cui, Fei Wang, Yue-Yang Xie, Si-Yuan Ding, Meng-Fan Luo, Chih-Hung Chou, Nai-Wen Chang, Kai-Wen Chen, Yu-Hsiang Cheng, Xin-Hong Wan, Wen-Lian Hsu, Tzong-Yi Lee, Feng-Xiang Wei, Hsien-Da Huang

Nucleic Acids Res., 2020

Multi-omics profiling reveals microRNA-mediated insulin signaling networks.

Yang-Chi-Dung Lin, Hsi-Yuan Huang, Sirjana Shrestha, Chih-Hung Chou, Yen-Hua Chen, Chi-Ru Chen, Hsiao-Chin Hong, Jing Li, Yi-An Chang, Men-Yee Chiew, Ya-Rong Huang, Siang-Jyun Tu, Ting-Hsuan Sun, Shun-Long Weng, Ching-Ping Tseng, Hsien-Da Huang

BMC Bioinform., 2020