Yang Li

Orcid: 0000-0003-2480-1972

Affiliations:
  • Nanjing University of Science and Technology, School of Computer Science and Engineering, China
  • University of Michigan, Department of Computational Medicine and Bioinformatics, Ann Arbor, MI, USA


According to our database1, Yang Li authored at least 19 papers between 2015 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
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Links

Online presence:

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Bibliography

2024
Dataset for "A Comparative Review of Deep Learning Methods for RNA Tertiary Structure Prediction".
Dataset, December, 2024

Dataset for "A Comparative Review of Deep Learning Methods for RNA Tertiary Structure Prediction".
Dataset, November, 2024

MolMetaLM: a Physicochemical Knowledge-Guided Molecular Meta Language Model.
CoRR, 2024

2022
Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.
PLoS Comput. Biol., September, 2022

Progressive assembly of multi-domain protein structures from cryo-EM density maps.
Nat. Comput. Sci., 2022

DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction.
Nucleic Acids Res., 2022

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
Nucleic Acids Res., 2022

2021
Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.
PLoS Comput. Biol., 2021

2020
SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.
J. Chem. Inf. Model., 2020

FUpred: detecting protein domains through deep-learning-based contact map prediction.
Bioinform., 2020

DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins.
Bioinform., 2020

2019
Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
PLoS Comput. Biol., 2019

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
Nucleic Acids Res., 2019

ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks.
Bioinform., 2019

2018
ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining Sequence-Profiling and Structure-Based Comparisons.
J. Chem. Inf. Model., 2018

2017
Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2016
KNN-based dynamic query-driven sample rescaling strategy for class imbalance learning.
Neurocomputing, 2016

GPCR-drug interactions prediction using random forest with drug-association-matrix-based post-processing procedure.
Comput. Biol. Chem., 2016

2015
Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015


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