Yuchen Zhuang

Orcid: 0000-0003-4641-894X

According to our database1, Yuchen Zhuang authored at least 52 papers between 2016 and 2025.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

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Bibliography

2025
CellForge: Agentic Design of Virtual Cell Models.
CoRR, August, 2025

RAG in the Wild: On the (In)effectiveness of LLMs with Mixture-of-Knowledge Retrieval Augmentation.
CoRR, July, 2025

MedAgentGym: Training LLM Agents for Code-Based Medical Reasoning at Scale.
CoRR, June, 2025

MSQA: Benchmarking LLMs on Graduate-Level Materials Science Reasoning and Knowledge.
CoRR, May, 2025

WorkForceAgent-R1: Incentivizing Reasoning Capability in LLM-based Web Agents via Reinforcement Learning.
CoRR, May, 2025

Towards Better Instruction Following Retrieval Models.
CoRR, May, 2025

AmorLIP: Efficient Language-Image Pretraining via Amortization.
CoRR, May, 2025

MLE-Dojo: Interactive Environments for Empowering LLM Agents in Machine Learning Engineering.
CoRR, May, 2025

Collab-RAG: Boosting Retrieval-Augmented Generation for Complex Question Answering via White-Box and Black-Box LLM Collaboration.
CoRR, April, 2025

Frame Extraction Person Retrieval Framework Based on Improved YOLOv8s and the Stage-Wise Clustering Person Re-Identification.
IET Image Process., 2025

DF<sup>2</sup>: Distribution-Free Decision-Focused Learning.
Proceedings of the Conference on Uncertainty in Artificial Intelligence, 2025

Hephaestus: Improving Fundamental Agent Capabilities of Large Language Models through Continual Pre-Training.
Proceedings of the 2025 Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies, 2025

Efficient Evolutionary Search Over Chemical Space with Large Language Models.
Proceedings of the Thirteenth International Conference on Learning Representations, 2025

2024
MUBen: Benchmarking the Uncertainty of Molecular Representation Models.
Trans. Mach. Learn. Res., 2024

Matryoshka: Learning to Drive Black-Box LLMs with LLMs.
CoRR, 2024

Efficient Evolutionary Search Over Chemical Space with Large Language Models.
CoRR, 2024

MedAdapter: Efficient Test-Time Adaptation of Large Language Models towards Medical Reasoning.
CoRR, 2024

TPD: Enhancing Student Language Model Reasoning via Principle Discovery and Guidance.
CoRR, 2024

EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records.
CoRR, 2024

HYDRA: Model Factorization Framework for Black-Box LLM Personalization.
Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Aligning Large Language Models with Representation Editing: A Control Perspective.
Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

POLYIE: A Dataset of Information Extraction from Polymer Material Scientific Literature.
Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

BBox-Adapter: Lightweight Adapting for Black-Box Large Language Models.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

ToolChain*: Efficient Action Space Navigation in Large Language Models with A* Search.
Proceedings of the Twelfth International Conference on Learning Representations, 2024

EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

MedAdapter: Efficient Test-Time Adaptation of Large Language Models Towards Medical Reasoning.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

HiGen: Hierarchy-Aware Sequence Generation for Hierarchical Text Classification.
Proceedings of the 18th Conference of the European Chapter of the Association for Computational Linguistics, 2024

Two Birds with One Stone: Enhancing Uncertainty Quantification and Interpretability with Graph Functional Neural Process.
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2024

RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records.
Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics, 2024

Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models.
Proceedings of the Findings of the Association for Computational Linguistics, 2024

2023
How Many Validation Labels Do You Need? Exploring the Design Space of Label-Efficient Model Ranking.
CoRR, 2023

Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models.
CoRR, 2023

DF2: Distribution-Free Decision-Focused Learning.
CoRR, 2023

MUBen: Benchmarking the Uncertainty of Pre-Trained Models for Molecular Property Prediction.
CoRR, 2023

ToolQA: A Dataset for LLM Question Answering with External Tools.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Large Language Model as Attributed Training Data Generator: A Tale of Diversity and Bias.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

AdaPlanner: Adaptive Planning from Feedback with Language Models.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

DyGen: Learning from Noisy Labels via Dynamics-Enhanced Generative Modeling.
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

Autoregressive Diffusion Model for Graph Generation.
Proceedings of the International Conference on Machine Learning, 2023

G-STO: Sequential Main Shopping Intention Detection via Graph-Regularized Stochastic Transformer.
Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

Retrieval-Augmented Large Language Models for Adolescent Idiopathic Scoliosis Patients in Shared Decision-Making.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

ReGen: Zero-Shot Text Classification via Training Data Generation with Progressive Dense Retrieval.
Proceedings of the Findings of the Association for Computational Linguistics: ACL 2023, 2023

2022
ReSel: N-ary Relation Extraction from Scientific Text and Tables by Learning to Retrieve and Select.
CoRR, 2022

End-to-end Stochastic Optimization with Energy-based Model.
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

ReSel: N-ary Relation Extraction from Scientific Text and Tables by Learning to Retrieve and Select.
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 2022

2020
Calibrated Language Model Fine-Tuning for In- and Out-of-Distribution Data.
Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing, 2020

EXAM: An Explainable Attention-based Model for COVID-19 Automatic Diagnosis.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019
DNA computing for combinational logic.
Sci. China Inf. Sci., 2019

2018
Arithmetic Computations Based on Chemical Reaction Networks.
Proceedings of the 2018 IEEE International Workshop on Signal Processing Systems, 2018

2017
A synthesis flow for fast convolution unit based on molecular reactions.
Proceedings of the 9th International Conference on Wireless Communications and Signal Processing, 2017

2016
Synthesis of Probability Theory Based on Molecular Computation.
Proceedings of the 2016 IEEE International Workshop on Signal Processing Systems, 2016


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