Yufei Huang

According to our database, Yufei Huang authored at least 189 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

Risk-aware Vehicle Motion Planning Using Bayesian LSTM-Based Model Predictive Control.

Yufei Huang, Mohsen A. Jafari

CoRR, 2023

A Survey on Protein Representation Learning: Retrospect and Prospect.

Lirong Wu, Yufei Huang, Haitao Lin, Stan Z. Li

CoRR, 2023

2022

A Distributed Multi-Agent Reinforcement Learning With Graph Decomposition Approach for Large-Scale Adaptive Traffic Signal Control.

Shan Jiang, Yufei Huang, Mohsen A. Jafari, Mohammad Jalayer

IEEE Trans. Intell. Transp. Syst., 2022

On the role of deep learning model complexity in adversarial robustness for medical images.

David Rodriguez, Tapsya Nayak, Yidong Chen, Ram Krishnan, Yufei Huang

BMC Medical Informatics Decis. Mak., 2022

Dual-channel competition: the role of quality improvement and price-matching.

Jinpeng Xu, Yufei Huang, Emmanouil Avgerinos, Gengzhong Feng, Feng Chu

Int. J. Prod. Res., 2022

Non-equispaced Fourier Neural Solvers for PDEs.

Haitao Lin, Lirong Wu, Yongjie Xu, Yufei Huang, Siyuan Li, Guojiang Zhao, Stan Z. Li

CoRR, 2022

Protein Language Models and Structure Prediction: Connection and Progression.

Bozhen Hu, Jun Xia, Jiangbin Zheng, Cheng Tan, Yufei Huang, Yongjie Xu, Stan Z. Li

CoRR, 2022

DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding.

Haitao Lin, Yufei Huang, Meng Liu, Xuanjing Li, Shuiwang Ji, Stan Z. Li

CoRR, 2022

FPT: Improving Prompt Tuning Efficiency via Progressive Training.

Yufei Huang, Yujia Qin, Huadong Wang, Yichun Yin, Maosong Sun, Zhiyuan Liu, Qun Liu

CoRR, 2022

Automated Graph Self-supervised Learning via Multi-teacher Knowledge Distillation.

Lirong Wu, Yufei Huang, Haitao Lin, Zicheng Liu, Tianyu Fan, Stan Z. Li

CoRR, 2022

Economic-Driven Adaptive Traffic Signal Control.

Shan Jiang, Yufei Huang, Mohsen A. Jafari, Mohammad Jalayer

CoRR, 2022

Driving Safety Prediction and Safe Route Mapping Using In-vehicle and Roadside Data.

Yufei Huang, Mohsen A. Jafari, Peter Jin

CoRR, 2022

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis.

Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang

Briefings Bioinform., 2022

Administration of Machine Learning Based Access Control.

Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Ravi S. Sandhu

Proceedings of the Computer Security - ESORICS 2022, 2022

FPT: Improving Prompt Tuning Efficiency via Progressive Training.

Yufei Huang, Yujia Qin, Huadong Wang, Yichun Yin, Maosong Sun, Zhiyuan Liu, Qun Liu

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022

Toward Deep Learning Based Access Control.

Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Mehrnoosh Shakarami, Ravi S. Sandhu

Proceedings of the CODASPY '22: Twelveth ACM Conference on Data and Application Security and Privacy, Baltimore, MD, USA, April 24, 2022

Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings.

Jiangbin Zheng, Yile Wang, Ge Wang, Jun Xia, Yufei Huang, Guojiang Zhao, Yue Zhang, Stan Z. Li

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

2021

Reconfigurable Intelligent Surfaces-Assisted Multiuser MIMO Uplink Transmission With Partial CSI.

Li You, Jiayuan Xiong, Yufei Huang, Derrick Wing Kwan Ng, Cunhua Pan, Wenjin Wang, Xiqi Gao

IEEE Trans. Wirel. Commun., 2021

On approximation algorithm for the edge metric dimension problem.

Yufei Huang, Bo Hou, Wen Liu, Lidong Wu, Stephen Rainwater, Suogang Gao

Theor. Comput. Sci., 2021

Energy Efficiency Optimization for Multi-Cell Massive MIMO: Centralized and Distributed Power Allocation Algorithms.

Li You, Yufei Huang, Di Zhang, Zheng Chang, Wenjin Wang, Xiqi Gao

IEEE Trans. Commun., 2021

Crowdsource-enabled integrated production and transportation scheduling for smart city logistics.

Xin Feng, Feng Chu, Chengbin Chu, Yufei Huang

Int. J. Prod. Res., 2021

CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training.

Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang

BMC Bioinform., 2021

The expected values and variances for Sombor indices in a general random chain.

Weilin Zhang, Lihua You, Hechao Liu, Yufei Huang

Appl. Math. Comput., 2021

TR-BERT: Dynamic Token Reduction for Accelerating BERT Inference.

Deming Ye, Yankai Lin, Yufei Huang, Maosong Sun

Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021

Intelligent Work: Person Centered Operations, Worker Wellness and the Triple Bottom Line.

Joan Cahill, Vivienne Howard, Yufei Huang, Junchi Ye, Stephen Ralph, Aidan Dillon

Proceedings of the HCI International 2021 - Posters - 23rd HCI International Conference, 2021

Addressing Human Factors and Ethics in the Design of 'Future Work' and Intelligent Systems for Use in Financial Services - Person Centered Operations, Intelligent Work & the Triple Bottom Line.

Joan Cahill, Vivienne Howard, Yufei Huang, Junchi Ye, Stephen Ralph, Aidan Dillon

Proceedings of the Digital Human Modeling and Applications in Health, Safety, Ergonomics and Risk Management. Human Body, Motion and Behavior, 2021

Access Control Policy Generation from User Stories Using Machine Learning.

John Heaps, Ram Krishnan, Yufei Huang, Jianwei Niu, Ravi S. Sandhu

Proceedings of the Data and Applications Security and Privacy XXXV, 2021

Interpretable Self-Supervised Facial Micro-Expression Learning to Predict Cognitive State and Neurological Disorders.

Arun Das, Jeffrey Mock, Yufei Huang, Edward J. Golob, Peyman Najafirad

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020

Coupling Coordination Relationship between Urban Sprawl and Urbanization Quality in the West Taiwan Strait Urban Agglomeration, China: Observation and Analysis from DMSP/OLS Nighttime Light Imagery and Panel Data.

Chunyan Lu, Lin Li, Yifan Lei, Chunying Ren, Ying Su, Yufei Huang, Yu Chen, Shaohua Lei, Weiwei Fu

Remote. Sens., 2020

A characterization of graphs with supereulerian line graphs.

Yufei Huang, Weihua He, Guixian Huang, Hong-Jian Lai, Sulin Song

Int. J. Comput. Math. Comput. Syst. Theory, 2020

Combining guaranteed and spot markets in display advertising: Selling guaranteed page views with stochastic demand.

Bowei Chen, Jingmin Huang, Yufei Huang, Stefanos D. Kollias, Shigang Yue

Eur. J. Oper. Res., 2020

Energy Efficiency and Spectral Efficiency Tradeoff in Massive MIMO Multicast Transmission with Statistical CSI.

Bin Jiang, Bowen Ren, Yufei Huang, Tingting Chen, Li You, Wenjin Wang

Entropy, 2020

Energy Efficiency Optimization in Massive MIMO Secure Multicast Transmission.

Bin Jiang, Linbo Qu, Yufei Huang, Yifei Zheng, Li You, Wenjin Wang

Entropy, 2020

The maximum α-spectral radius and the majorization theorem of k-uniform supertrees.

Lihua You, Lihong Deng, Yufei Huang

Discret. Appl. Math., 2020

Deep learning of pharmacogenomics resources: moving towards precision oncology.

Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen

Briefings Bioinform., 2020

Automatic Detection and Prediction of Cybersickness Severity using Deep Neural Networks from user's Physiological Signals.

Rifatul Islam, Yonggun Lee, Mehrad Jaloli, Imtiaz Muhammad, Dakai Zhu, Paul Rad, Yufei Huang, John Quarles

Proceedings of the 2020 IEEE International Symposium on Mixed and Augmented Reality, 2020

Max-Min Energy-Efficient Multi-Cell Massive MIMO Transmission Exploiting Statistical CSI.

Yufei Huang, Li You, Jiayuan Xiong, Wenjin Wang, Xiqi Gao

Proceedings of the 9th IEEE/CIC International Conference on Communications in China, 2020

Reconfigurable Intelligent Surfaces Assisted MIMO-MAC with Partial CSI.

Jiayuan Xiong, Li You, Yufei Huang, Derrick Wing Kwan Ng, Wenjin Wang, Xiqi Gao

Proceedings of the 2020 IEEE International Conference on Communications, 2020

2019

Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods.

Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang

PLoS Comput. Biol., 2019

Feature Selection of Deep Learning Models for EEG-Based RSVP Target Detection.

Jingxia Chen, Zijing Mao, Ru Zheng, Yufei Huang, Lifeng He

IEICE Trans. Inf. Syst., 2019

Modeling EEG data distribution with a Wasserstein Generative Adversarial Network to predict RSVP Events.

Sharaj Panwar, Paul Rad, Tzyy-Ping Jung, Yufei Huang

CoRR, 2019

Convolutional neural network models for cancer type prediction based on gene expression.

Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen

CoRR, 2019

FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes.

Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang

Bioinform., 2019

Generating EEG signals of an RSVP Experiment by a Class Conditioned Wasserstein Generative Adversarial Network.

Sharaj Panwar, Paul Rad, John Quarles, Yufei Huang

Proceedings of the 2019 IEEE International Conference on Systems, Man and Cybernetics, 2019

A Semi-Supervised Wasserstein Generative Adversarial Network for Classifying Driving Fatigue from EEG signals.

Sharaj Panwar, Paul Rad, John Quarles, Edward J. Golob, Yufei Huang

Proceedings of the 2019 IEEE International Conference on Systems, Man and Cybernetics, 2019

Target Classification in a Novel SSVEP-RSVP Based BCI Gaming System.

Tapsya Nayak, Li-Wei Ko, Tzyy-Ping Jung, Yufei Huang

Proceedings of the 2019 IEEE International Conference on Systems, Man and Cybernetics, 2019

Predicting Auditory Spatial Attention from EEG using Single- and Multi-task Convolutional Neural Networks.

Zhentao Liu, Jeffrey Mock, Yufei Huang, Edward J. Golob

Proceedings of the 2019 IEEE International Conference on Systems, Man and Cybernetics, 2019

Design of Spaceborne AIS System.

Xiangyu Lin, Dong Yan, Yufei Huang, Fan Bai, Xiongwen He, Panpan Zhan

Proceedings of the Wireless and Satellite Systems, 2019

Research on Image Static Target Recognition and Extraction Based on Space Intelligent System.

Yufei Huang, Jia Xu, Xiangyu Lin, Xiongwen He, Ran Zhang, Wenjie Li

Proceedings of the Wireless and Satellite Systems, 2019

The Satellite GPS Antenna In-Orbit Phase Center Calibration Method.

Ning Liu, Yufei Huang

Proceedings of the Communications, Signal Processing, and Systems, 2019

High Precision Spatiotemporal Datum Design Based on Ground Observation Position.

Yufei Huang, Ji Gao, Dan Wang, Yong Liu, Zhengji Song, Jia Xu, Lantao Liu

Proceedings of the Communications, Signal Processing, and Systems, 2019

Improving Web Image Search with Contextual Information.

Xiaohui Xie, Jiaxin Mao, Yiqun Liu, Maarten de Rijke, Qingyao Ai, Yufei Huang, Min Zhang, Shaoping Ma

Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019

Charactering hESCs Organoids from Electrical Signals with Machine Learning.

Md Musaddaqul Hasib, Zane Lybrand, Vanesa Nieto Estevez, Jenny Hsieh, Yufei Huang

Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

2018

Time Allocation in Entrepreneurial Selling: Impact of Consumer Peer Learning and Incumbent Reaction.

Yufei Huang, Onesun Steve Yoo, Bilal Gokpinar

IEEE Trans. Engineering Management, 2018

MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data.

Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.

Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang

Nucleic Acids Res., 2018

Deep Learning Models for EEG-based Rapid Serial Visual Presentation Event Classification.

Fuquan Zhang, Zijing Mao, Yufei Huang, Lin Xu, Gangyi Ding

J. Inf. Hiding Multim. Signal Process., 2018

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen

CoRR, 2018

Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen

CoRR, 2018

A Bayesian framework for the inference of gene regulatory networks from time and pseudo-time series data.

Manuel Sanchez-Castillo, David Blanco, Isabel M. Tienda-Luna, Maria Carmen Carrion Perez, Yufei Huang

Bioinform., 2018

Base-pair resolution detection of transcription factor binding site by deep deconvolutional network.

Sirajul Salekin, Jianqiu (Michelle) Zhang, Yufei Huang

Bioinform., 2018

Deep-2'-O-Me: Predicting 2'-O-methylation sites by Convolutional Neural Networks.

Milad Mostavi, Sirajul Salekin, Yufei Huang

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

CLIPSeed: Achieving High Precision miRNA Binding Sites Prediction using PAR-CLIP Data.

Mingzhu Lu, Yufei Huang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Generating target/non-target images of an RSVP experiment from brain signals in by conditional generative adversarial network.

Yonggun Lee, Yufei Huang

Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018

A hierarchical LSTM model with attention for modeling EEG non-stationarity for human decision prediction.

Md Musaddaqul Hasib, Tapsya Nayak, Yufei Huang

Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018

Deep EEG super-resolution: Upsampling EEG spatial resolution with Generative Adversarial Networks.

Isaac A. Corley, Yufei Huang

Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018

A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association.

Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Malware Detection in Cloud Infrastructures Using Convolutional Neural Networks.

Mahmoud Abdelsalam, Ram Krishnan, Yufei Huang, Ravi S. Sandhu

Proceedings of the 11th IEEE International Conference on Cloud Computing, 2018

2017

Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.

Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Posted price programmatic guarantee in display advertising.

Bowei Chen, Jingmin Huang, Yufei Huang, Stefanos D. Kollias, Shigang Yue

CoRR, 2017

QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model.

Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng

BMC Bioinform., 2017

Driver's fatigue prediction by deep covariance learning from EEG.

Mehdi Hajinoroozi, Jianqiu (Michelle) Zhang, Yufei Huang

Proceedings of the 2017 IEEE International Conference on Systems, Man, and Cybernetics, 2017

EEG-based biometric identification with deep learning.

Zijing Mao, Wan Xiang Yao, Yufei Huang

Proceedings of the 8th International IEEE/EMBS Conference on Neural Engineering, 2017

Deep Transfer Learning for Cross-subject and Cross-experiment Prediction of Image Rapid Serial Visual Presentation Events from EEG Data.

Mehdi Hajinoroozi, Zijing Mao, Yuan-Pin Lin, Yufei Huang

Proceedings of the Augmented Cognition. Neurocognition and Machine Learning, 2017

Prediction of temperature induced office worker's performance during typing task using EEG.

Tapsya Nayak, Tinghe Zhang, Zijing Mao, Xiaojing Xu, Daniel J. Pack, Bing Dong, Yufei Huang

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Design of deep convolutional networks for prediction of image rapid serial visual presentation events.

Zijing Mao, Wan Xiang Yao, Yufei Huang

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Prediction of fatigue-related driver performance from EEG data by deep Riemannian model.

Mehdi Hajinoroozi, Jianqiu (Michelle) Zhang, Yufei Huang

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

A deep learning model for predicting transcription factor binding location at single nucleotide resolution.

Sirajul Salekin, Jianqiu (Michelle) Zhang, Yufei Huang

Proceedings of the 2017 IEEE EMBS International Conference on Biomedical & Health Informatics, 2017

2016

EEG-based prediction of driver's cognitive performance by deep convolutional neural network.

Mehdi Hajinoroozi, Zijing Mao, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang

Signal Process. Image Commun., 2016

m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks.

Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang

PLoS Comput. Biol., 2016

Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015.

Zhongming Zhao, Yunlong Liu, Yufei Huang, Kun Huang, Jianhua Ruan

BMC Syst. Biol., 2016

A novel algorithm for calling mRNA m⁶A peaks by modeling biological variances in MeRIP-seq data.

Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang

Bioinform., 2016

Predicting EEG Sample Size Required for Classification Calibration.

Zijing Mao, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang

Proceedings of the Foundations of Augmented Cognition: Neuroergonomics and Operational Neuroscience, 2016

Detection of control or idle state with a likelihood ratio test in asynchronous SSVEP-based brain-computer interface systems.

Lenis Mauricio Merino, Tapsya Nayak, Garrett Hall, Daniel J. Pack, Yufei Huang

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

2015

MeT-DB: a database of transcriptome methylation in mammalian cells.

Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang

Nucleic Acids Res., 2015

The partition theorem of connected digraphs and its enumerative applications.

Yufei Huang, Bolian Liu

Ars Comb., 2015

Noncrossing partitions with fixed points having specific properties.

Yufei Huang, Bolian Liu

Ars Comb., 2015

Feature extraction with deep belief networks for driver's cognitive states prediction from EEG data.

Mehdi Hajinoroozi, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang

Proceedings of the IEEE China Summit and International Conference on Signal and Information Processing, 2015

Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data.

Xiaodong Cui, Jia Meng, Shaowu Zhang, Yufei Huang

Proceedings of the IEEE China Summit and International Conference on Signal and Information Processing, 2015

Prediction of driver's drowsy and alert states from EEG signals with deep learning.

Mehdi Hajinoroozi, Zijing Mao, Yufei Huang

Proceedings of the 6th IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, 2015

Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates.

Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012).

Yufei Huang, Yidong Chen, Xiaoning Qian

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device.

Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang

Neuroinformatics, 2014

BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data.

Zijing Mao, Chifeng Ma, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang

BMC Bioinform., 2014

Differential analysis of RNA methylome with improved spatial resolution.

Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test.

Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

Classification of non-time-locked rapid serial visual presentation events for brain-computer interaction using deep learning.

Zijing Mao, Vernon Lawhern, Lenis Mauricio Merino, Kenneth Ball, Li Deng, Brent J. Lance, Kay Robbins, Yufei Huang

Proceedings of the IEEE China Summit & International Conference on Signal and Information Processing, 2014

2013

BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database.

Chifeng Ma, Hung-I Harry Chen, Mario Flores, Yufei Huang, Yidong Chen

BMC Syst. Biol., 2013

Exome-based analysis for RNA epigenome sequencing data.

Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang

Bioinform., 2013

Computational and Statistical Approaches for Modeling of Proteomic and Genomic Networks.

Mohamed N. Nounou, Hazem N. Nounou, Erchin Serpedin, Aniruddha Datta, Yufei Huang

Adv. Bioinformatics, 2013

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis.

Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen

Adv. Bioinformatics, 2013

A system based approach to construct a Kaposi sarcoma-associated herpesvirus (KSHV) specific pathway crosstalk network.

Amy Wafa Daali, Yufei Huang, Mo M. Jamshidi

Proceedings of the 8th International Conference on System of Systems Engineering, 2013

A bag-of-words model for task-load prediction from EEG in complex environments.

Lenis Mauricio Merino, Jia Meng, Stephen M. Gordon, Brent J. Lance, Tony Johnson, Victor Paul, Kay Robbins, Jean M. Vettel, Yufei Huang

Proceedings of the IEEE International Conference on Acoustics, 2013

Differential analysis of rna methylation sequencing data.

Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang

Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

A Deep Learning method for classification of images RSVP events with EEG data.

Shaheen Ahmed, Lenis Mauricio Merino, Zijing Mao, Jia Meng, Kay Robbins, Yufei Huang

Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs.

Mario Flores, Yufei Huang, Yidong Chen

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

An HMM-based Exome Peak-finding package for RNA epigenome sequencing data.

Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Bayesian sparse factor model for transcriptional regulatory networks inference.

Manuel Sanchez-Castillo, Isabel M. Tienda-Luna, David Blanco, Maria Carmen Carrion Perez, Yufei Huang

Proceedings of the 21st European Signal Processing Conference, 2013

Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer.

Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Unveiling the dynamics in RNA epigenetic regulations.

Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

BIMMER: A Bi-layer hidden Markov model for differential methylation analysis.

Zijing Mao, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Understanding MicroRNA Regulation: A computational perspective.

Dong Yue, Jia Meng, Mingzhu Lu, C. L. Philip Chen, Maozu Guo, Yufei Huang

IEEE Signal Process. Mag., 2012

On a conjecture for the sum of Laplacian eigenvalues.

Shouzhong Wang, Yufei Huang, Bolian Liu

Math. Comput. Model., 2012

Determining the number of new employees with learning, forgetting and variable wage with a Newsvendor model in pull systems.

Yufei Huang, Feng Chu, Chengbin Chu, Yingluo Wang

J. Intell. Manuf., 2012

Temporal clustering of gene expression patterns using short-time segments.

Nguyen T. Nguyen, Ying Ann Chiao, Yufei Huang, Shou-Jiang Gao, Merry Lindsey, Yidong Chen, Yufang Jin

Int. J. Funct. Informatics Pers. Medicine, 2012

The Generalized τ-Bases of Primitive Non-Powerful Signed Digraphs with d Loops.

Yufei Huang, Bolian Liu, Siyuan Chen

Graphs Comb., 2012

Iterative decoding in Factor Graph representation using Particle Filtering.

Isabel M. Tienda-Luna, Diego P. Ruiz, Yufei Huang, María C. Carrión

Digit. Signal Process., 2012

Advances in systems biology: computational algorithms and applications.

Yufei Huang, Zhongming Zhao, Hua Xu, Yu Shyr, Bing Zhang

BMC Syst. Biol., 2012

The maximum Wiener polarity index of unicyclic graphs.

Huoquan Hou, Bolian Liu, Yufei Huang

Appl. Math. Comput., 2012

Basis-expansion factor models for uncovering transcription factor regulatory network.

Manuel Sanchez-Castillo, Jia Meng, Isabel M. Tienda-Luna, Yufei Huang

Proceedings of the IEEE Statistical Signal Processing Workshop, 2012

Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data.

Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang

Proceedings of the IEEE Statistical Signal Processing Workshop, 2012

Classification of EEG recordings without perfectly time-locked events.

Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang

Proceedings of the IEEE Statistical Signal Processing Workshop, 2012

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer.

Lin Zhang, Hui Liu, Tzu-Hung Hsiao, Yidong Chen, Yufei Huang

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

A new algorithm for predicting competing endogenous rnas.

Mario Flores, Yufei Huang

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2011

On the identities of modulo-p partitions.

Yufei Huang, Bolian Liu

Math. Comput. Model., 2011

The signless Laplacian spectral radius of bicyclic graphs with prescribed degree sequences.

Yufei Huang, Bolian Liu, Yingluan Liu

Discret. Math., 2011

Bayesian parameter estimation for nonlinear modelling of biological pathways.

Omid Ghasemi, Merry Lindsey, Tianyi Yang, Nguyen T. Nguyen, Yufei Huang, Yufang Jin

BMC Syst. Biol., 2011

<i>PlantMiRNAPred</i>: efficient classification of real and pseudo plant pre-miRNAs.

Ping Xuan, Maozu Guo, Xiaoyan Liu, Yangchao Huang, Wenbin Li, Yufei Huang

Bioinform., 2011

Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model.

Jia Meng, Hung-I Harry Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang

Proceedings of the IEEE International Conference on Acoustics, 2011

Clustering DNA methylation expressions using nonparametric beta mixture model.

Lin Zhang, Jia Meng, Hui Liu, Yufei Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Computational prediction of microRNA regulatory pathways.

Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Beyond seed match: Improving miRNA target prediction using PAR-CLIP data.

Mingzhu Lu, C. L. Philip Chen, Yufei Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy.

Chifeng Ma, Yufei Huang, Huang-I Harry, Yidong Chen

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Gene sets enrichment analysis of miRNA expression profile.

Tzu-Hung Hsiao, Hung-I Harry Chen, Patricia C. Sanchez-Diaz, Jaclyn Y. Hung, Yidong Chen, Yufei Huang

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Bayesian peptide peak detection for high resolution TOF mass spectrometry.

Jianqiu Zhang, Xiaobo Zhou, Honghui Wang, Anthony Suffredini, Lin Zhang, Yufei Huang, Stephen T. C. Wong

IEEE Trans. Signal Process., 2010

The index of maximum ambiguous density for irreducible non-powerful sign pattern matrices.

Yufei Huang, Bolian Liu

Eur. J. Comb., 2010

Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model.

Jia Meng, Jianqiu (Michelle) Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang

EURASIP J. Adv. Signal Process., 2010

On the Wiener polarity index of trees with maximum degree or given number of leaves.

Bolian Liu, Huoquan Hou, Yufei Huang

Comput. Math. Appl., 2010

The scrambling index of primitive digraphs.

Bolian Liu, Yufei Huang

Comput. Math. Appl., 2010

On a conjecture about the kth lower multiexponent.

Yufei Huang, Bolian Liu

Comput. Math. Appl., 2010

Improving performance of mammalian microRNA target prediction.

Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang

BMC Bioinform., 2010

miRNA Target Prediction Method Based on the Combination of Multiple Algorithms.

Lin Zhang, Hui Liu, Dong Yue, Hui He, Yufei Huang

Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

SysMicrO: A Novel Systems Approach for miRNA Target Prediction.

Hui Liu, Lin Zhang, Qilong Sun, Yidong Chen, Yufei Huang

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2010

An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks.

Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang

Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks.

Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

A computational framework for predicting drug Mode-of-Action.

Chifeng Ma, Hung-I Harry Chen, Yufei Huang, Yidong Chen

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

A Bayesian decision fusion approach for microRNA target prediction.

Dong Yue, Hui Liu, Mingzhu Lu, Philip Chen, Yidong Chen, Yufei Huang

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Constructing a compound mode-of-action network for personalized drug effectiveness prediction.

Chifeng Ma, Hung-I Harry Chen, Yufei Huang, Yidong Chen

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Adaptive Sensor Fault Detection and Identification Using Particle Filter Algorithms.

Tao Wei, Yufei Huang, C. L. Philip Chen

IEEE Trans. Syst. Man Cybern. Part C, 2009

Reverse engineering gene regulatory networks.

Yufei Huang, Isabel M. Tienda-Luna, Yufeng Wang

IEEE Signal Process. Mag., 2009

Applications of Signal Processing Techniques to Bioinformatics, Genomics, and Proteomics.

Erchin Serpedin, Javier Garcia-Frías, Yufei Huang, Ulisses M. Braga-Neto

EURASIP J. Bioinform. Syst. Biol., 2009

Clustering of Gene Expression Data Based on Shape Similarity.

Travis J. Hestilow, Yufei Huang

EURASIP J. Bioinform. Syst. Biol., 2009

Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.

Jia Meng, Shou-Jiang Gao, Yufei Huang

Bioinform., 2009

A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling.

Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang

Proceedings of the International Joint Conferences on Bioinformatics, 2009

Mapping miRNA Regulation to Functional Gene Sets.

Yidong Chen, Hung-I Harry Chen, Yufei Huang

Proceedings of the International Joint Conferences on Bioinformatics, 2009

A comprehensive study of a SVM-based miRNA target prediction algorithm.

Hui Liu, Dong Yue, Yidong Chen, Yufei Huang

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2008

Constructing Gene Networks Using Variational Bayesian Variable Selection.

Isabel M. Tienda-Luna, Yufang Yin, Yufei Huang, Diego Pablo Ruiz Padillo, Maria Carmen Carrion Perez, Yufeng Wang

Artif. Life, 2008

Bayesian peak detection for Pro-TOF MS MALDI data.

Jianqiu Zhang, Honghui Wang, Anthony Suffredini, Denise Gonzales, Elias Gonzalez, Yufei Huang, Xiaobo Zhou

Proceedings of the IEEE International Conference on Acoustics, 2008

2007

Bayesian Inference of Genetic Regulatory Networks from Time Series Microarray Data Using Dynamic Bayesian Networks.

Yufei Huang, Jianyin Wang, Jianqiu Zhang, Maribel Sanchez, Yufeng Wang

J. Multim., 2007

Uncovering Gene Regulatory Networks from Time-Series Microarray Data with Variational Bayesian Structural Expectation Maximization.

Isabel M. Tienda-Luna, Yufei Huang, Yufang Yin, Diego Pablo Ruiz Padillo, Maria Carmen Carrion Perez

EURASIP J. Bioinform. Syst. Biol., 2007

Clustering Of Gene Expression Data Based On Shape Similarity.

Travis J. Hestilow, James Perez, Yufei Huang

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

Particle Filtering for Adaptive Sensor Fault Detection and Identification.

Tao Wei, Yufei Huang, C. L. Philip Chen

Proceedings of the 2006 IEEE International Conference on Robotics and Automation, 2006

Reverse Engineering Yeast Gene Regulatory Networks using Graphical Models.

Jiayin Wang, Yufei Huang, Maribel Sanchez, Yufeng Wang, Jianqiu (Michelle) Zhang

Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

2005

Bayesian detection for BLAST.

Yufei Huang, Jianqiu (Michelle) Zhang, Petar M. Djuric

IEEE Trans. Signal Process., 2005

Adaptive Blind Multiuser Detection over Flat Fast Fading Channels Using Particle Filtering.

Yufei Huang, Jianqiu (Michelle) Zhang, Isabel M. Tienda-Luna, Petar M. Djuric, Diego Pablo Ruiz Padillo

EURASIP J. Wirel. Commun. Netw., 2005

Remaining engine life estimation for a sensor-based aircraft engine.

Ten-Huei Guo, Philip Chen, Yufei Huang

Proceedings of the IEEE International Conference on Systems, 2005

Symbol detection with time-varying unknown phase by expectation propagation.

Tao Wei, Yufei Huang, Yuan (Alan) Qi

Proceedings of the 2005 IEEE International Conference on Acoustics, 2005

Belief-directed sequential probabilistic data association multiuser detector.

Yufei Huang, Yufang Yin, Jianqiu (Michelle) Zhang

Proceedings of the 2005 IEEE International Conference on Acoustics, 2005

Sensor validation for flight control by particle filtering.

Tao Wei, Yufei Huang, Philip Chen

Proceedings of the 13th European Signal Processing Conference, 2005

2004

A blind particle filtering detector of signals transmitted over flat fading channels.

Yufei Huang, Petar M. Djuric

IEEE Trans. Signal Process., 2004

A hybrid importance function for particle filtering.

Yufei Huang, Petar M. Djuric

IEEE Signal Process. Lett., 2004

A generalized probabilistic data association multiuser detector.

Yufei Huang, Jianqiu (Michelle) Zhang

Proceedings of the 2004 IEEE International Symposium on Information Theory, 2004

Joint symbol detection and timing estimation with stochastic M-algorithm.

Yufang Yin, Yufei Huang, Jianqiu (Michelle) Zhang

Proceedings of the 2004 IEEE International Conference on Acoustics, 2004

Turbo equalization using probabilistic data association.

Yufang Yin, Yufei Huang, Jianqiu (Michelle) Zhang

Proceedings of the Global Telecommunications Conference, 2004. GLOBECOM '04, Dallas, Texas, USA, 29 November, 2004

2003

Particle filtering.

Petar M. Djuric, Jayesh H. Kotecha, Jianqui Zhang, Yufei Huang, Tadesse Ghirmai, Mónica F. Bugallo, Joaquín Míguez

IEEE Signal Process. Mag., 2003

Detection with particle filtering in BLAST systems.

Yufei Huang, Jianqiu Zhang, Petar M. Djuric

Proceedings of IEEE International Conference on Communications, 2003

Lower bounds on the variance of deterministic signal parameter estimators using Bayesian inference.

Yufei Huang, Jianqiu (Michelle) Zhang

Proceedings of the 2003 IEEE International Conference on Acoustics, 2003

Joint velocity estimation and symbol detection in non-stationary fading channels by particle filtering.

Yufei Huang, Petar M. Djuric, Jianqiu (Michelle) Zhang

Proceedings of the Global Telecommunications Conference, 2003

2002

Multiuser detection of synchronous code-division multiple-access signals by perfect sampling.

Yufei Huang, Petar M. Djuric

IEEE Trans. Signal Process., 2002

Perfect sampling: a review and applications to signal processing.

Petar M. Djuric, Yufei Huang, Tadesse Ghirmai

IEEE Trans. Signal Process., 2002

Variable Selection by Perfect Sampling.

Yufei Huang, Petar M. Djuric

EURASIP J. Adv. Signal Process., 2002

A new importance function for particle filtering and its application to blind detection in flat fading channels.

Yufei Huang, Petar M. Djuric

Proceedings of the IEEE International Conference on Acoustics, 2002

Multiuser detection with particle filtering.

Jianqiu Zhang, Yufei Huang, Petar M. Djuric

Proceedings of the 11th European Signal Processing Conference, 2002

A blind particle filtering detector for joint channel estimation, tracking and data detection over flat fading channels.

Yufei Huang, Petar M. Djuric

Proceedings of the 11th European Signal Processing Conference, 2002

Applications of particle filtering to communications: A review.

Petar M. Djuric, Jianqiu Zhang, Tadesse Ghirmai, Yufei Huang, Jayesh H. Kotecha

Proceedings of the 11th European Signal Processing Conference, 2002

2001

Multiuser detection of synchronous CDMA signals by the Gibbs coupler.

Yufei Huang, Petar M. Djuric

Proceedings of the IEEE International Conference on Acoustics, 2001

2000

Estimation of a Bernoulli parameter p from imperfect trials.

Petar M. Djuric, Yufei Huang

IEEE Signal Process. Lett., 2000

Bayesian detection of transient signals in colored noise.

Yufei Huang, Petar M. Djuric

Proceedings of the IEEE International Conference on Acoustics, 2000

Choosing priors for an important class of signal processing problems.

Yufei Huang, Petar M. Djuric

Proceedings of the 10th European Signal Processing Conference, 2000