Abdulkadir Kocak

According to our database, Abdulkadir Kocak authored at least 6 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of eight.
• Erdős number of seven.

2025

DeepConf: Leveraging ANI-ML Potentials for Exploring Local Minima with Application to Bioactive Conformations.

Omer Tayfuroglu, Irem N. Zengin, M. Serdar Koca, Abdulkadir Kocak

J. Chem. Inf. Model., 2025

2024

Benchmarking ANI potentials as a rescoring function and screening FDA drugs for SARS-CoV-2 M^pro.

Irem N. Zengin, M. Serdar Koca, Omer Tayfuroglu, Muslum Yildiz, Abdulkadir Kocak

J. Comput. Aided Mol. Des., December, 2024

2023

Computational analysis of substrate recognition of Sars-Cov-2 Mpro main protease.

Hilal Sena Tasci, Ebru Akkus, Muslum Yildiz, Abdulkadir Kocak

Comput. Biol. Chem., December, 2023

The performance of ANI-ML potentials for ligand-n(H₂O) interaction energies and estimation of hydration free energies from end-point MD simulations.

Mütesir Temel, Omer Tayfuroglu, Abdulkadir Kocak

J. Comput. Chem., February, 2023

2022

Accurate Binding Free Energy Method from End-State MD Simulations.

Ebru Akkus, Omer Tayfuroglu, Muslum Yildiz, Abdulkadir Kocak

J. Chem. Inf. Model., 2022

2019

Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking Human Immunoglobulin A Antibody and Escape Mechanism in Noroviruses Upon Mutation.

Muslum Yildiz, Abdulkadir Kocak

J. Comput. Biol., 2019