Abubakr Shafique

According to our database, Abubakr Shafique authored at least 14 papers between 2021 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Teacher-Student Model for Detecting and Classifying Mitosis in the MIDOG 2025 Challenge.

Seungho Choe, Xiaoli Qin, Abubakr Shafique, Amanda Dy, Susan Done, Dimitrios Androutsos, April Khademi

CoRR, September, 2025

How Fair are Foundation Models? Exploring the Role of Covariate Bias in Histopathology.

Abubakr Shafique, Amanda Dy, Xiaoli Qin, Najd Alshamlan, Susan Done, Dimitrios Androutsos, April Khademi

Proceedings of the Fairness of AI in Medical Imaging - Third International Workshop, 2025

2024

Personalized 2D Binary Patient Codes of Tissue Images and Immunogenomic Data Through Multimodal Self-Supervised Fusion.

Areej Alsaafin, Abubakr Shafique, Saghir Alfasly, Hamid R. Tizhoosh

CoRR, 2024

SPLICE - Streamlining Digital Pathology Image Processing.

Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran A. Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R. Tizhoosh

CoRR, 2024

Analysis and Validation of Image Search Engines in Histopathology.

Isaiah Lahr, Saghir Alfasly, Peyman Nejat, Jibran A. Khan, Luke Kottom, Vaishnavi Kumbhar, Areej Alsaafin, Abubakr Shafique, Sobhan Hemati, Ghazal Alabtah, Nneka I. Comfere, Dennis Murphree, Aaron Mangold, Saba Yasir, Chady Meroueh, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, Hamid R. Tizhoosh

CoRR, 2024

Rotation-Agnostic Image Representation Learning for Digital Pathology.

Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran A. Khan, Areej Alsaafin, Ghazal Alabtah, Hamid R. Tizhoosh

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023

Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images.

Abubakr Shafique, Saghir Alfasly, Areej Alsaafin, Peyman Nejat, Jibran A. Khan, Hamid R. Tizhoosh

CoRR, 2023

When is a Foundation Model a Foundation Model.

Saghir Alfasly, Peyman Nejat, Sobhan Hemati, Jibran A. Khan, Isaiah Lahr, Areej Alsaafin, Abubakr Shafique, Nneka I. Comfere, Dennis Murphree, Chady Meroueh, Saba Yasir, Aaron Mangold, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, Hamid R. Tizhoosh

CoRR, 2023

A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks.

Abubakr Shafique, Ricardo Gonzalez, Liron Pantanowitz, Puay Hoon Tan, Alberto Machado, Ian A Cree, Hamid R. Tizhoosh

CoRR, 2023

Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning'.

Milad Sikaroudi, Mehdi Afshari, Abubakr Shafique, Shivam Kalra, Hamid R. Tizhoosh

CoRR, 2023

Immunohistochemistry Biomarkers-Guided Image Search for Histopathology.

Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Hamid R. Tizhoosh

Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

Composite Biomarker Image for Advanced Visualization in Histopathology.

Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, Hamid R. Tizhoosh

Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

Class-imbalanced Unsupervised and Semi-Supervised Domain Adaptation for Histopathology Images.

Seyedeh Maryam Hosseini, Abubakr Shafique, Morteza Babaie, Hamid R. Tizhoosh

Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

2021

Automatic Multi-Stain Registration of Whole Slide Images in Histopathology.

Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, Hamid R. Tizhoosh

Proceedings of the 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2021