Aleksey Y. Ogurtsov

According to our database, Aleksey Y. Ogurtsov authored at least 9 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall.

Aleksey Y. Ogurtsov, Gelio Alves, Alex Rubio, Brendan Joyce, Björn Andersson, Roger Karlsson, Edward R. B. Moore, Yi-Kuo Yu

J. Comput. Biol., February, 2024

2016

Optimization of signal-to-noise ratio for efficient microarray probe design.

Olga V. Matveeva, Yury D. Nechipurenko, Evgeniy Riabenko, Chikako Ragan, Nafisa N. Nazipova, Aleksey Y. Ogurtsov, Svetlana A. Shabalina

Bioinform., 2016

2014

The role of periodic mRNA secondary structure and RNA-RNA interactions in biological regulation and complexity.

Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Anna Kashina, Nikolay A. Spiridonov

Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

2006

Computational models with thermodynamic and composition features improve siRNA design.

Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov

BMC Bioinform., 2006

Analysis of internal loops within the RNA secondary structure in almost quadratic time.

Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg

Bioinform., 2006

2004

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.

Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina

BMC Bioinform., 2004

2002

A hierarchical approach to aligning collinear regions of genomes.

Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov

Bioinform., 2002

OWEN: aligning long collinear regions of genomes.

Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, Alexey S. Kondrashov

Bioinform., 2002

1995

SAMSON: a software package for the biopolymer primary structure analysis.

Nafisa N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov

Comput. Appl. Biosci., 1995