Alex M. Clark

According to our database, Alex M. Clark authored at least 17 papers between 2006 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

Capturing mixture composition: an open machine-readable format for representing mixed substances.

Alex M. Clark, Leah McEwen, Peter Gedeck, Barry A. Bunin

J. Cheminformatics, 2019

2016

BioAssay templates for the semantic web.

Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin

PeerJ Comput. Sci., 2016

Machine Learning Model Analysis and Data Visualization with Small Molecules Tested in a Mouse Model of <i>Mycobacterium tuberculosis</i> Infection (2014-2015).

Sean Ekins, Alexander L. Perryman, Alex M. Clark, Robert C. Reynolds, Joel S. Freundlich

J. Chem. Inf. Model., 2016

Open Source Bayesian Models. 3. Composite Models for Prediction of Binned Responses.

Alex M. Clark, Krishna Dole, Sean Ekins

J. Chem. Inf. Model., 2016

2015

Open Source Bayesian Models. 2. Mining a "Big Dataset" To Create and Validate Models with ChEMBL.

Alex M. Clark, Sean Ekins

J. Chem. Inf. Model., 2015

Open Source Bayesian Models. 1. Application to ADME/Tox and Drug Discovery Datasets.

Alex M. Clark, Krishna Dole, Anna Coulon-Spektor, Andrew M. McNutt, George Grass, Joel S. Freundlich, Robert C. Reynolds, Sean Ekins

J. Chem. Inf. Model., 2015

Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data.

Alex M. Clark, Antony J. Williams, Sean Ekins

J. Cheminformatics, 2015

Machine learning models identify molecules active against the Ebola virus <i>in vitro</i>.

Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, Peter B. Madrid

F1000Research, 2015

2014

Looking Back to the Future: Predicting <i>in Vivo</i> Efficacy of Small Molecules versus <i>Mycobacterium tuberculosis</i>.

Sean Ekins, Richard Pottorf, Robert C. Reynolds, Antony J. Williams, Alex M. Clark, Joel S. Freundlich

J. Chem. Inf. Model., 2014

New target prediction and visualization tools incorporating open source molecular fingerprints for TB Mobile 2.0.

Alex M. Clark, Malabika Sarker, Sean Ekins

J. Cheminformatics, 2014

Bigger data, collaborative tools and the future of predictive drug discovery.

Sean Ekins, Alex M. Clark, S. Joshua Swamidass, Nadia K. Litterman, Antony J. Williams

J. Comput. Aided Mol. Des., 2014

2013

TB mobile: a mobile app for anti-tuberculosis molecules with known targets.

Sean Ekins, Alex M. Clark, Malabika Sarker

J. Cheminformatics, 2013

2011

Accurate Specification of Molecular Structures: The Case for Zero-Order Bonds and Explicit Hydrogen Counting.

Alex M. Clark

J. Chem. Inf. Model., 2011

2010

2D Depiction of Fragment Hierarchies.

Alex M. Clark

J. Chem. Inf. Model., 2010

Basic primitives for molecular diagram sketching.

Alex M. Clark

J. Cheminformatics, 2010

2007

2D Depiction of Protein-Ligand Complexes.

Alex M. Clark, Paul Labute

J. Chem. Inf. Model., 2007

2006

2D Structure Depiction.

Alex M. Clark, Paul Labute, Martin Santavy

J. Chem. Inf. Model., 2006