Alisa Yurovsky

According to our database, Alisa Yurovsky authored at least 10 papers between 2010 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images.

Aniruddha Ganguly, Debolina Chatterjee, Wentao Huang, Jie Zhang, Alisa Yurovsky, Travis Steele Johnson, Chao Chen

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025

2024

FaStaNMF: A Fast and Stable Non-Negative Matrix Factorization for Gene Expression.

Michael D. Sweeney, Luke Torre-Healy, Virginia L. Ma, Margaret Hall, Lucie Chrastecka, Alisa Yurovsky, Richard A. Moffitt

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images.

Aniruddha Ganguly, Debolina Chatterjee, Wentao Huang, Jie Zhang, Alisa Yurovsky, Travis Steele Johnson, Chao Chen

CoRR, 2024

RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency.

Wentao Huang, Meilong Xu, Xiaoling Hu, Shahira Abousamra, Aniruddha Ganguly, Saarthak Kapse, Alisa Yurovsky, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Michael L. Miller, Chao Chen

CoRR, 2024

New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients.

Mahmudul Hasan, Ariadna Kim Silva, Shahira Abousamra, Shao-Jun Tang, Prateek Prasanna, Joel H. Saltz, Kevin Gardner, Chao Chen, Alisa Yurovsky

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2022

Statistical methodology for ribosomal frameshift detection.

Alisa Yurovsky, Justin Gardin, Bruce Futcher, Steven Skiena

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2019

Pre-Phaser: Precise Cell-Cycle Phase Detector for scRNA-seq.

Alisa Yurovsky, Bruce Futcher, Steven Skiena

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

DeepAnnotator: Genome Annotation with Deep Learning.

Mohammad Ruhul Amin, Alisa Yurovsky, Yingtao Tian, Steven Skiena

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2014

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Sebastian M. Waszak, Helena Kilpinen, Andreas R. Gschwind, Andrea Orioli, Sunil K. Raghav, Robert M. Witwicki, Eugenia Migliavacca, Alisa Yurovsky, Tuuli Lappalainen, Nouria Hernandez, Alexandre Reymond, Emmanouil T. Dermitzakis, Bart Deplancke

Bioinform., 2014

2010

FluRF, an automated flu virus reassortment finder based on phylogenetic trees.

Alisa Yurovsky, Bernard M. E. Moret

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010