Joel H. Saltz

According to our database1, Joel H. Saltz
  • authored at least 343 papers between 1985 and 2018.
  • has a "Dijkstra number"2 of three.

Timeline

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Bibliography

2018
Big data and extreme-scale computing.
IJHPCA, 2018

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurrency and Computation: Practice and Experience, 2018

2017
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis.
IJHPCA, 2017

Unsupervised Histopathology Image Synthesis.
CoRR, 2017

Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images.
CoRR, 2017

Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images.
Proceedings of the 2017 IEEE Winter Conference on Applications of Computer Vision, 2017

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.
Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017

Spatio-temporal Analysis for New York State SPARCS Data.
Proceedings of the Summit on Clinical Research Informatics, 2017

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems.
Proceedings of the 2017 IEEE International Conference on Cluster Computing, 2017

20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon.
Proceedings of the AMIA 2017, 2017

Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State.
Proceedings of the AMIA 2017, 2017

ConvNets with Smooth Adaptive Activation Functions for Regression.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017

2016
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets.
CoRR, 2016

Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images.
CoRR, 2016

Neural Networks with Smooth Adaptive Activation Functions for Regression.
CoRR, 2016

Hierarchical nucleus segmentation in digital pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification.
Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition, 2016

S2CR3UM: A Solution to the In Silico Relevance, Reliability & Reproducibility Conundrum.
Proceedings of the AMIA 2016, 2016

POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports.
Proceedings of the AMIA 2016, 2016

Safe "cloudification" of large images through picker APIs.
Proceedings of the AMIA 2016, 2016

2015
Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs.
CoRR, 2015

Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification.
CoRR, 2015

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies.
BMC Bioinformatics, 2015

Maps of Human Disease: A Web-Based Framework for the Visualization of Human Disease Comorbidity and Clinical Profile Overlay.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015

SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015

Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM).
Proceedings of the 27th International Symposium on Computer Architecture and High Performance Computing, 2015

Integrative Informatics and Predictive Modeling Support for Population Health.
Proceedings of the AMIA 2015, 2015

OpenHealth Platform for Interactive Contextualization of Population Health Open Data.
Proceedings of the AMIA 2015, 2015

2014
Approximate similarity search for online multimedia services on distributed CPU-GPU platforms.
VLDB J., 2014

Region templates: Data representation and management for high-throughput image analysis.
Parallel Computing, 2014

Region Templates: Data Representation and Management for Large-Scale Image Analysis.
CoRR, 2014

Parallel content-based sub-image retrieval using hierarchical searching.
Bioinformatics, 2014

GlycoPattern: a web platform for glycan array mining.
Bioinformatics, 2014

Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems.
Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing, 2014

Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

2013
Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.
PVLDB, 2013

Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines.
Parallel Computing, 2013

The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data.
Journal of Biomedical Informatics, 2013

Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data.
JAMIA, 2013

Semantically Interoperable XML Data.
Int. J. Semantic Computing, 2013

Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures.
IJHPCA, 2013

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU.
CoRR, 2013

Scalable Locality-Sensitive Hashing for Similarity Search in High-Dimensional, Large-Scale Multimedia Datasets.
CoRR, 2013

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013

Demonstration of Hadoop-GIS: a spatial data warehousing system over MapReduce.
Proceedings of the 21st SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2013

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Clinical Phenotyping with the Analytic Information Warehouse.
Proceedings of the AMIA 2013, 2013

Temporal Abstraction-based Clinical Phenotyping with Eureka!
Proceedings of the AMIA 2013, 2013

2012
Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems.
PVLDB, 2012

Digital Pathology: Data-Intensive Frontier in Medical Imaging.
Proceedings of the IEEE, 2012

Integrated morphologic analysis for the identification and characterization of disease subtypes.
JAMIA, 2012

High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms
CoRR, 2012

Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines
CoRR, 2012

Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms
CoRR, 2012

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems
CoRR, 2012

Efficient regression testing of ontology-driven systems.
Proceedings of the International Symposium on Software Testing and Analysis, 2012

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012

Towards building a high performance spatial query system for large scale medical imaging data.
Proceedings of the SIGSPATIAL 2012 International Conference on Advances in Geographic Information Systems (formerly known as GIS), 2012

ZPEG: A hybrid DPCM-DCT based approach for compression of Z-stack images.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Enabling ontology based semantic queries in biomedical database systems.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
Proceedings of the AMIA 2012, 2012

Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources.
Proceedings of the AMIA 2012, 2012

A Pipeline Supporting Efficient and Flexible Analytics Using Longitudinal and High-dimensional Extracts from Clinical Databases.
Proceedings of the AMIA 2012, 2012

Leveraging Derived Data Elements in Data Analytic Models for Understanding and Predicting Hospital Readmissions.
Proceedings of the AMIA 2012, 2012

2011
Run Time Parallelization.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
IEEE Trans. Biomed. Engineering, 2011

Optimizing latency and throughput of application workflows on clusters.
Parallel Computing, 2011

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.
JAMIA, 2011

A new steerable pressure force for parametric deformable models.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Morphological signatures and genomic correlates in glioblastoma.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
An Integrative Approach for In Silico Glioma Research.
IEEE Trans. Biomed. Engineering, 2010

Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer Treatment Outcome Prediction: Preliminary Evaluation.
J. Digital Imaging, 2010

Exploring the performance of massively multithreaded architectures.
Concurrency and Computation: Practice and Experience, 2010

Parameterized specification, configuration and execution of data-intensive scientific workflows.
Cluster Computing, 2010

High Performance Computing Techniques for Scaling Image Analysis Workflows.
Proceedings of the Applied Parallel and Scientific Computing, 2010

An evaluation of feature sets and sampling techniques for de-identification of medical records.
Proceedings of the ACM International Health Informatics Symposium, 2010

Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism.
Proceedings of the IEEE International Conference on Acoustics, 2010

HIV-K: an Integrative Knowledge Base for Semantic Integration of AIDS-related Malignancy Data and Treatment Outcomes.
Proceedings of the Healthgrid Applications and Core Technologies, 2010

Two-point correlation as a feature for histology images: Feature space structure and correlation updating.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading.
Signal Processing Systems, 2009

An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications.
IEEE Trans. Parallel Distrib. Syst., 2009

Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development.
Pattern Recognition, 2009

Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation.
Pattern Recognition, 2009

Tensor classification of N-point correlation function features for histology tissue segmentation.
Medical Image Analysis, 2009

VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid.
J. Digital Imaging, 2009

A Knowledge-Anchored Integrative Image Search and Retrieval System.
J. Digital Imaging, 2009

HPC and Grid Computing for Integrative Biomedical Research.
IJHPCA, 2009

Stroma classification for neuroblastoma on graphics processors.
IJDMB, 2009

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Systems Biology, 2009

Parallel materialization of large ABoxes.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Architectural implications for spatial object association algorithms.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

An integrated framework for performance-based optimization of scientific workflows.
Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, 2009

2008
Reconstruction of Cellular Biological Structures from Optical Microscopy Data.
IEEE Trans. Vis. Comput. Graph., 2008

Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Trans. Information Technology in Biomedicine, 2008

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets.
Journal of Biomedical Informatics, 2008

Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research.
JAMIA, 2008

Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment.
JAMIA, 2008

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments.
International Journal of Parallel Programming, 2008

e-Science, caGrid, and Translational Biomedical Research.
IEEE Computer, 2008

Analysis and Semantic Querying in Large Biomedical Image Datasets.
IEEE Computer, 2008

Using overlays for efficient data transfer over shared wide-area networks.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008

Computerized microscopic image analysis of follicular lymphoma.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008

Cancer treatment outcome prediction by assessing temporal change: application to cervical cancer.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008

A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008

Pathological image segmentation for neuroblastoma using the GPU.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Translational research design templates, Grid computing, and HPC.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Designing and parameterizing a workflow for optimization: A case study in biomedical imaging.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

Texture classification using nonlinear color quantization: Application to histopathological image analysis.
Proceedings of the IEEE International Conference on Acoustics, 2008

Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP.
Proceedings of the 17th International Symposium on High-Performance Distributed Computing (HPDC-17 2008), 2008

Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs.
Proceedings of the High Speed and Large Scale Scientific Computing - Selected Papers from the High Performance Computing Workshop, Cetraro, Italy, June 30, 2008

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research.
Proceedings of the Global Healthgrid: e-Science Meets Biomedical Informatics, 2008

2007
Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies.
IEEE Trans. Med. Imaging, 2007

Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments.
Parallel Computing, 2007

GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support.
J. Digital Imaging, 2007

Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services.
J. Grid Comput., 2007

Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data.
Computing in Science and Engineering, 2007

Parallel four-dimensional Haralick texture analysis for disk-resident image datasets.
Concurrency and Computation: Practice and Experience, 2007

Toward terabyte pattern mining: an architecture-conscious solution.
Proceedings of the 12th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2007

Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Intelligent Optimization of Parallel and Distributed Applications.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach.
Proceedings of the International Conference on Image Processing, 2007

Dynamic Data-Driven Systems Approach for Simulation Based Optimizations.
Proceedings of the Computational Science, 2007

Optimizing multiple queries on scientific datasets with partial replicas.
Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), 2007

Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters.
Proceedings of the Euro-Par 2007, 2007

Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters.
Proceedings of the Euro-Par 2007, 2007

Performance vs. accuracy trade-offs for large-scale image analysis applications.
Proceedings of the 2007 IEEE International Conference on Cluster Computing, 2007

Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma.
Proceedings of the 5th IEEE workshop on Challenges of large applications in distributed environments, 2007

An Efficient and Reliable Scientific Workflow System.
Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007

Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

The GPU on biomedical image processing for color and phenotype analysis.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

caGrid 1.0: A Grid Enterprise Architecture for Cancer Research.
Proceedings of the AMIA 2007, 2007

The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.
Proceedings of the AMIA 2007, 2007

Computerized Pathological Image Analysis For Neuroblastoma Prognosis.
Proceedings of the AMIA 2007, 2007

2006
Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases.
JAMIA, 2006

Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis.
IJHPCA, 2006

Models, methods and middleware for grid-enabled multiphysics oil reservoir management.
Eng. Comput. (Lond.), 2006

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.
Bioinformatics, 2006

Imaging and visual analysis - Large image correction and warping in a cluster environment.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments.
Proceedings of the 18th Symposium on Computer Architecture and High Performance Computing (SBAC-PAD 2006), 2006

Registration and 3D visualization of large microscopy images.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2006

On the detection of intra-ventricular dyssynchrony in the left ventricle from routine cardiac MRI.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

I/O conscious algorithm design and systems support for data analysis on emerging architectures.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

On Creating Efficient Object-relational Views of Scientific Datasets.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository.
Proceedings of the Computational Science, 2006

Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O.
Proceedings of the 15th IEEE International Symposium on High Performance Distributed Computing, 2006

Service-Based Access to and Processing of Large Scientific Datasets.
Proceedings of the High Performance Computing and Grids in Action, 2006

A New Deformable Model for Boundary Tracking in Cardiac MRI and Its Application to the Detection of Intra-Ventricular Dyssynchrony.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications.
Proceedings of the 2006 IEEE International Conference on Cluster Computing, 2006

Dorian: Grid Service Infrastructure for Identity Management and Federation.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Prototype Integration of Protein Electrophoresis Laboratory Results In an Information Warehouse to Improve Workflow and Data Analysis.
Proceedings of the AMIA 2006, 2006

2005
XML database support for distributed execution of data-intensive scientific workflows.
SIGMOD Record, 2005

Application of Information Technology: A Grid-Based Image Archival and Analysis System.
JAMIA, 2005

The GPU as an indirection engine for a fast information retrieval.
IJEB, 2005

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies.
Future Generation Comp. Syst., 2005

A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies.
Concurrency - Practice and Experience, 2005

Grid-based management of biomedical data using an XML-based distributed data management system.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005

Exploiting Parallelism on Irregular Applications Using the GPU.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Supporting Large Scale Medical and Scientific Datasets.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

A Services Oriented Framework for Next Generation Data Analysis Centers.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

Design of a next generation sampling service for large scale data analysis applications.
Proceedings of the 19th Annual International Conference on Supercomputing, 2005

Towards Dynamic Data-Driven Optimization of Oil Well Placement.
Proceedings of the Computational Science, 2005

Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services.
Proceedings of the Data Management in Grids, First VLDB Workshop, 2005

Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying.
Proceedings of the 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26, 2005

Servicing range queries on multidimensional datasets with partial replicas.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

The GPU on irregular computing: performance issues and contributions.
Proceedings of the 9th International Conference on Computer-Aided Design and Computer Graphics, 2005

2004
Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments.
IEEE Trans. Parallel Distrib. Syst., 2004

A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets.
Proceedings of the ACM/IEEE SC2004 Conference on High Performance Networking and Computing, 2004

Supporting SQL-3 Aggregations on Grid-Based Data Repositories.
Proceedings of the Languages and Compilers for High Performance Computing, 2004

Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies.
Proceedings of the Computational Science, 2004

Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004

An Approach for Automatic Data Virtualization.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004

Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data.
Proceedings of the Grid Computing: The New Frontier of High Performance Computing [post-proceedings of the High Performance Computing Workshop, 2004

Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O.
Proceedings of the 5th International Workshop on Grid Computing (GRID 2004), 2004

An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

A distributed data management middleware for data-driven application systems.
Proceedings of the 2004 IEEE International Conference on Cluster Computing (CLUSTER 2004), 2004

Serving queries to multi-resolution datasets on disk-based storage clusters.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004

2003
The virtual microscope.
IEEE Trans. Information Technology in Biomedicine, 2003

Interprocedural definition-use chains of dynamic pointer-linked data structures.
Scientific Programming, 2003

Database Support for Data-Driven Scientific Applications in the Grid.
Parallel Processing Letters, 2003

Identifying parallelism in programs with cyclic graphs.
J. Parallel Distrib. Comput., 2003

Optimizing Reduction Computations In a Distributed Environment.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003

A Component-based Implementation of Multiple Sequence Alignment.
Proceedings of the 2003 ACM Symposium on Applied Computing (SAC), 2003

Middleware Infrastructure for Large-Scale Data Management.
Proceedings of the IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2003, 2003

Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies.
Proceedings of the Languages and Compilers for Parallel Computing, 2003

Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries.
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003


Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model.
Proceedings of the 12th International Symposium on High-Performance Distributed Computing (HPDC-12 2003), 2003

Impact of High Performance Sockets on Data Intensive Applications.
Proceedings of the 12th International Symposium on High-Performance Distributed Computing (HPDC-12 2003), 2003

Applying Database Support for Large Scale Data Driven Science in Distributed Environments.
Proceedings of the 4th International Workshop on Grid Computing (GRID 2003), 2003

A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

Impact of CPOE Order Sets on Lab Orders.
Proceedings of the AMIA 2003, 2003

Information Warehouse as a Tool to Analyze Computerized Physician Order Entry Order Set Utilization: Opportunities for Improvement.
Proceedings of the AMIA 2003, 2003

Proteomic Pattern Analysis, a New Era of Screening Cancers.
Proceedings of the AMIA 2003, 2003

Order Sets Utilization in a Clinical Order Entry System.
Proceedings of the AMIA 2003, 2003

Pharmacokinetic Mapping of Breast Tumors: a New Statistical Analysis Technique for Dynamic magnetic resonance Imaging.
Proceedings of the AMIA 2003, 2003

2002
Data parallel language and compiler support for data intensive applications.
Parallel Computing, 2002

Processing large-scale multi-dimensional data in parallel and distributed environments.
Parallel Computing, 2002

Optimizing execution of component-based applications using group instances.
Future Generation Comp. Syst., 2002

Executing multiple pipelined data analysis operations in the grid.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002

Active Proxy-G: optimizing the query execution process in the grid.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002

Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Compiler supported high-level abstractions for sparse disk-resident datasets.
Proceedings of the 16th international conference on Supercomputing, 2002

Low-Cost Non-Intrusive Debugging Strategies for Distributed Parallel Programs.
Proceedings of the 2002 IEEE International Conference on Cluster Computing (CLUSTER 2002), 2002

Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs.
Proceedings of the 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 2002

2001
Analysis of the Clustering Properties of the Hilbert Space-Filling Curve.
IEEE Trans. Knowl. Data Eng., 2001

Distributed processing of very large datasets with DataCutter.
Parallel Computing, 2001

Visualization of Large Data Sets with the Active Data Repository.
IEEE Computer Graphics and Applications, 2001

Efficient execution of multiple query workloads in data analysis applications.
Proceedings of the 2001 ACM/IEEE conference on Supercomputing, 2001

A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001

Performance Optimization for Data Intensive Grid Applications.
Proceedings of the 3rd Annual International Workshop on Active Middleware Services (AMS 2001), 2001

Runtime and Compiler Support for Irregular Computations.
Proceedings of the Compiler Optimizations for Scalable Parallel Systems Languages, 2001

Optimizing Execution of Component-based Applications using Group Instances.
Proceedings of the First IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2001), 2001

Compiler and Runtime Analysis for Efficient Communication in Data Intensive Applications.
Proceedings of the 2001 International Conference on Parallel Architectures and Compilation Techniques (PACT 2001), 2001

2000
Efficient Performance Prediction for Large-Scale, Data-Intensive Applications.
IJHPCA, 2000

Query Optimization in KESS - An Ontology-Based KBMS.
Proceedings of the XV Simpósio Brasileiro de Banco de Dados, 2000

DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems.
Proceedings of the Eighth NASA Goddard Space Flight Center Conference on Mass Storage Systems and Technologies in cooperation with Seventeenth IEEE Symposium on Mass Storage Systems, 2000

High Level Programming Methodologies for Data Intensive Computations.
Proceedings of the Languages, 2000

Compiling Data Intensive Applications with Spatial Coordinates.
Proceedings of the Languages and Compilers for Parallel Computing, 2000

Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets.
Proceedings of the 14th International Parallel & Distributed Processing Symposium (IPDPS'00), 2000

Compiling object-oriented data intensive applications.
Proceedings of the 14th international conference on Supercomputing, 2000

Identifying Parallelism in Programs with Cyclic Graphs.
Proceedings of the 2000 International Conference on Parallel Processing, 2000

Evaluation of Active Disks for Decision Support Databases.
Proceedings of the Sixth International Symposium on High-Performance Computer Architecture, 2000

Design of a Framework for Data-Intensive Wide-Area Applications.
Proceedings of the 9th Heterogeneous Computing Workshop, 2000

1999
Object-Relational Queries into Multidimensional Databases with the Active Data Repository.
Parallel Processing Letters, 1999

Active Storage Hierarchy, Database Systems and Applications - Socratic Exegesis.
Proceedings of the VLDB'99, 1999

Querying Very Large Multi-dimensional Datasets in ADR.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1999

Towards a Knowledge Base Management System (KBMS): An Ontology-Aware Database Management System (DBMS).
Proceedings of the XIV Simpósio Brasileiro de Banco de Dados, 1999

Coupling Multiple Simulations via a High Performance Customizable Database System.
Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999

Database Methods for Efficient Manipulation of Very Large Datasets.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999

Infrastructure for Building Parallel Database Systems for Multi-Dimensional Data.
Proceedings of the 13th International Parallel Processing Symposium / 10th Symposium on Parallel and Distributed Processing (IPPS / SPDP '99), 1999

Performance impact of proxies in data intensive client-server applications.
Proceedings of the 13th international conference on Supercomputing, 1999

A High-Performance Database System for Managing Large Multi-resolution Medical Images.
Proceedings of the AMIA 1999, 1999

1998
Scalability Analysis of Declustering Methods for Multidimensional Range Queries.
IEEE Trans. Knowl. Data Eng., 1998

T2: A Customizable Parallel Database for Multi-Dimensional Data.
SIGMOD Record, 1998

The Design and Evaluation of a High-Performance Earth Science Database.
Parallel Computing, 1998

Programming Tools and Environments.
Commun. ACM, 1998

A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines.
Proceedings of the Languages, 1998

Adapting to Bandwidth Variations in Wide-Area Data Combination.
Proceedings of the 18th International Conference on Distributed Computing Systems, 1998

Active Disks: Programming Model, Algorithms and Evaluation.
Proceedings of the ASPLOS-VIII Proceedings of the 8th International Conference on Architectural Support for Programming Languages and Operating Systems, 1998

A graphical tool for ad hoc query generation.
Proceedings of the AMIA 1998, 1998

Digital dynamic telepathology-the Virtual Microscope.
Proceedings of the AMIA 1998, 1998

1997
Interprocedural Data Flow Based Optimizations for Distributed Memory Compilation.
Softw., Pract. Exper., 1997

Resource-aware metacomputing.
Concurrency - Practice and Experience, 1997

Programming Irregular Applications: Runtime Support, Compilation and Tools.
Advances in Computers, 1997

The Utility of Exploiting Idle Workstations for Parallel Computation.
Proceedings of the 1997 ACM SIGMETRICS international conference on Measurement and modeling of computer systems, 1997

Page Replacement Using Marginal Loss Functions.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1997

Scheduling in a High Performance Remote-Sensing Data Server.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997

Identifying DEF/USE Information of Statements that Construct and Traverse Dynamic Recursive Data Structures.
Proceedings of the Languages and Compilers for Parallel Computing, 1997

A Customizable Simulator for Workstation Networks.
Proceedings of the 11th International Parallel Processing Symposium (IPPS '97), 1997

Interoperability of Data Parallel Runtime Libraries.
Proceedings of the 11th International Parallel Processing Symposium (IPPS '97), 1997

Titan: A High-Performance Remote Sensing Database.
Proceedings of the Thirteenth International Conference on Data Engineering, 1997

Semantic Indexing for Complex Patient Grouping.
Proceedings of the AMIA 1997, 1997

The Virtual Microscope.
Proceedings of the AMIA 1997, 1997

1996
Parallelization Techniques for Sparse Matrix Applications.
J. Parallel Distrib. Comput., 1996

Dynamic Linking for Mobile Programs.
Proceedings of the Mobile Object Systems, 1996

Sumatra: A Language for Resource-Aware Mobile Programs.
Proceedings of the Mobile Object Systems, 1996

Side Effect Analysis on User-Defined Reduction Functions with Dynamic Pointer-Linked Data Structures.
Proceedings of the Languages and Compilers for Parallel Computing, 1996

Study of Scalable Declustering Algorithms for Parallel Grid Files.
Proceedings of IPPS '96, 1996

Tuning the Performance of I/O-Intensive Parallel Applications.
IOPADS, 1996

Experimental Evaluation of Efficient Sparse Matrix Distributions.
Proceedings of the 10th international conference on Supercomputing, 1996

Runtime Coupling of Data-Parallel Programs.
Proceedings of the 10th international conference on Supercomputing, 1996

An Interprocedural Framework for Placement of Asynchronous I/O Operations.
Proceedings of the 10th international conference on Supercomputing, 1996

A High Performance Image Database System for Remotely Sensed Imagery.
Proceedings of the Euro-Par '96 Parallel Processing, 1996

1995
Runtime Support and Compilation Methods for User-Specified Irregular Data Distributions.
IEEE Trans. Parallel Distrib. Syst., 1995

An Integrated Runtime and Compile-Time Approach for Parallelizing Structured and Block Structured Applications.
IEEE Trans. Parallel Distrib. Syst., 1995

Implementation of a parallel unstructured Euler solver on shared- and distributed-memory architectures.
The Journal of Supercomputing, 1995

Distributed Memory Compiler Design for Sparse Problems.
IEEE Trans. Computers, 1995

Runtime and Language Support for Compiling Adaptive Irregular Programs on Distributed-memory Machines.
Softw., Pract. Exper., 1995

Low Latency Messages on Distributed Memory Multiprocessors.
Scientific Programming, 1995

Multiprocessor Runtime Support for Fine-Grained, Irregular Dags.
Parallel Processing Letters, 1995

Supporting irregular distributions using data-parallel languages.
IEEE P&DT, 1995

Index Array Flattening Through Program Transformation.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995

Interprocedural Compilation of Irregular Applications for Distributed Memory Machines.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995

Runtime Support Dynamic Load Balancing Strategies for Structured Adaptive Applications.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995

Efficient Support for Irregular Applications on Distributed-Memory Machines.
Proceedings of the Fifth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), 1995

Interprocedural Partial Redundancy Elimination and its Application to Distributed Memory Compilation.
Proceedings of the ACM SIGPLAN'95 Conference on Programming Language Design and Implementation (PLDI), 1995

Interprocedural Data Flow Based Optimizations for Compilation of Irregular Problems.
Proceedings of the Languages and Compilers for Parallel Computing, 1995

Run-Time Techniques for Parallelizing Sparse Matrix Problems.
Proceedings of the Parallel Algorithms for Irregularly Structured Problems, 1995

Index translation schemes for adaptive computations on distributed memory multicomputers.
Proceedings of IPPS '95, 1995

Data parallel programming in an adaptive environment.
Proceedings of IPPS '95, 1995

1994
Communication Optimizations for Irregular Scientific Computations on Distributed Memory Architectures.
J. Parallel Distrib. Comput., 1994

Run-time and compile-time support for adaptive irregular problems.
Proceedings of the Proceedings Supercomputing '94, 1994

Interprocedural Communication Optimizations for Distributed Memory Compilation.
Proceedings of the Languages and Compilers for Parallel Computing, 1994

High performance computing for land cover dynamics.
Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

Value-Based Distributions in Fortran D.
Proceedings of the High-Performance Computing and Networking, 1994

1993
Runtime compilation techniques for data partitioning and communication schedule reuse.
Proceedings of the Proceedings Supercomputing '93, 1993


Compiler and runtime support for structured and block structured applications.
Proceedings of the Proceedings Supercomputing '93, 1993

Parallelizing Molecular Dynamics Codes using the Parti Software Primitives.
Proceedings of the Sixth SIAM Conference on Parallel Processing for Scientific Computing, 1993

Slicing Analysis and Indirect Accesses to Distributed Arrays.
Proceedings of the Languages and Compilers for Parallel Computing, 1993

1992
Embedding Data Mappers with Distributed Memory Machine Compilers.
SIGPLAN Workshop, 1992

Performance of Distributed Sparse Cholesky Factorization with Pre-Scheduling.
Proceedings of the Proceedings Supercomputing '92, 1992

Implementation of a Parallel Unstructured Euler Solver on Shared and Distributed Memory Architectures.
Proceedings of the Proceedings Supercomputing '92, 1992

Compiler Analysis for Irregular Problems in Fortran D.
Proceedings of the Languages and Compilers for Parallel Computing, 1992

Compiler and runtime support for irregularly coupled regular meshes.
Proceedings of the 6th international conference on Supercomputing, 1992

1991
Run-Time Parallelization and Scheduling of Loops.
IEEE Trans. Computers, 1991

Performance Effects of Irregular Communication Patterns on Massively Parallel Multiprocessors.
J. Parallel Distrib. Comput., 1991

Performance of Hashed Cache Data Migration Schemes on Multicomputers.
J. Parallel Distrib. Comput., 1991

Multiprocessors and run-time compilation.
Concurrency - Practice and Experience, 1991

Execution time support for adaptive scientific algorithms on distributed memory machines.
Concurrency - Practice and Experience, 1991

Solving Unstructured Mesh Problems with Domain Decomposed GMRES/ILU.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991

Unstructured Mesh Problems, PARTI Primitives, and the ARF Compiler.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991

Runtime Compilation Methods for Multicomputers.
Proceedings of the International Conference on Parallel Processing, 1991

The Preprocessed Doacross Loop.
Proceedings of the International Conference on Parallel Processing, 1991

1990
An Anlysis of Scatter Decomposition.
IEEE Trans. Computers, 1990

Aggregation Methods for Solving Sparse Triangular Systems on Multiprocessors.
SIAM J. Scientific Computing, 1990

Run-Time Scheduling and Execution of Loops on Message Passing Machines.
J. Parallel Distrib. Comput., 1990

Krylov Methods Preconditioned with Incompletely Factored Matrices on the CM-2.
J. Parallel Distrib. Comput., 1990

1989
Delay point schedules for irregular parallel computations.
International Journal of Parallel Programming, 1989

Run-Time Parallelization and Scheduling of Loops.
SPAA, 1989

Domain Decomposition Methods in Aerodynamics.
Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, 1989

Execution Time Support for Scientific Programs on Distributed Memory Machines.
Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, 1989

The doconsider loop.
Proceedings of the 3rd international conference on Supercomputing, 1989

1988
Dynamic Remapping of Parallel Computations with Varying Resource Demands.
IEEE Trans. Computers, 1988

Towards developing robust algorithms for solving partial differential equations on MIMD machines.
Parallel Computing, 1988

Parallel processing of biological sequence comparison algorithms.
International Journal of Parallel Programming, 1988

Principles of runtime support for parallel processors.
Proceedings of the 2nd international conference on Supercomputing, 1988

1987
The PARTY Parallel Runtime System - Invited Talk.
Proceedings of the Third SIAM Conference on Parallel Processing for Scientific Computing, 1987

1986
A Comparative Analysis of Static and Dynamic Load Balancing Strategies.
Proceedings of the International Conference on Parallel Processing, 1986

1985
Reduction of the effects of the communication delays in scientific algorithms on message passing MIMD architectures.
Proceedings of the Selected Papers from the Second Conference on Parallel Processing for Scientific Computing, 1985


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