Amanda Birmingham

According to our database, Amanda Birmingham authored at least 6 papers between 2005 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

Adam Rule, Amanda Birmingham, Cristal Zuñiga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose

PLoS Comput. Biol., 2019

2018

Ten Simple Rules for Reproducible Research in Jupyter Notebooks.

Adam Rule, Amanda Birmingham, Cristal Zuñiga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose

CoRR, 2018

Interactive network visualization in Jupyter notebooks: visJS2jupyter.

Sara Brin Rosenthal, Julia Len, Mikayla Webster, Aaron Gary, Amanda Birmingham, Kathleen M. Fisch

Bioinform., 2018

Efficient population-scale variant analysis and prioritization with VAPr.

Amanda Birmingham, Adam M. Mark, Carlo Mazzaferro, Guorong Xu, Kathleen M. Fisch

Bioinform., 2018

2010

NoiseMaker: simulated screens for statistical assessment.

Phoenix Kwan, Amanda Birmingham

Bioinform., 2010

2005

Maximum Sequence Alignment Fails to Predict Off-targeted Gene Regulation by RNAi.

Amanda Birmingham, Emily M. Anderson, William S. Marshall, Anastasia Khvorova

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005