Rob Knight
Orcid: 0000-0002-0975-9019Affiliations:
- UC San Diego, USA
According to our database1,
Rob Knight
authored at least 45 papers
between 2005 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Bibliography
2023
Host-Variable-Embedding Augmented Microbiome-Based Simultaneous Detection of Multiple Diseases by Deep Learning.
Adv. Intell. Syst., December, 2023
Proceedings of the Practice and Experience in Advanced Research Computing, 2023
Proceedings of The ACM Collective Intelligence Conference, 2023
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, 2023
GenoMiX: Accelerated Simultaneous Analysis of Human Genomics, Microbiome Metagenomics, and Viral Sequences.
Proceedings of the IEEE Biomedical Circuits and Systems Conference, 2023
2022
Frontiers Bioinform., 2022
Proceedings of the International Conference on Field-Programmable Technology, 2022
2021
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
PLoS Comput. Biol., 2021
Proceedings of the PEARC '21: Practice and Experience in Advanced Research Computing, 2021
Proceedings of the 17th IEEE International Conference on eScience, 2021
Proceedings of the CHI '21: CHI Conference on Human Factors in Computing Systems, 2021
2020
Nat., 2020
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data.
CoRR, 2020
Bioinform., 2020
Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude.
Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020
2019
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.
PLoS Comput. Biol., 2019
PLoS Comput. Biol., 2019
2018
Docent: transforming personal intuitions to scientific hypotheses through content learning and process training.
Proceedings of the Fifth Annual ACM Conference on Learning at Scale, 2018
2017
Proceedings of the 2017 CHI Conference on Human Factors in Computing Systems, 2017
2016
Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease.
Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016
2015
2013
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.
PLoS Comput. Biol., 2013
Toward Anthropomimetic Robotics: Development, Simulation, and Control of a Musculoskeletal Torso.
Artif. Life, 2013
2012
A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.
Briefings Bioinform., 2012
2011
PrimerProspector: <i>de novo</i> design and taxonomic analysis of barcoded polymerase chain reaction primers.
Bioinform., 2011
Bioinform., 2011
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data.
Appl. Ontology, 2011
2010
Bioinform., 2010
Proceedings of the 10th IEEE-RAS International Conference on Humanoid Robots, 2010
2009
CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes.
Bioinform., 2009
Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment.
Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, 2009
2008
BMC Bioinform., 2008
Proceedings of the Eleventh International Conference on the Synthesis and Simulation of Living Systems, 2008
2007
Proceedings of the Grid Computing for Bioinformatics and Computational Biology, 2007
2006
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context.
BMC Bioinform., 2006
BMC Bioinform., 2006
BMC Bioinform., 2006
2005
A Lightweight, Scalable Grid Computing Framework for Parallel Bioinformatics Applications.
Proceedings of the 19th Annual International Symposium on High Performance Computing Systems and Applications (HPCS 2005), 2005