Anatoly M. Ruvinsky

According to our database, Anatoly M. Ruvinsky authored at least 8 papers between 2005 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2017

Deciphering Cryptic Binding Sites on Proteins by Mixed-Solvent Molecular Dynamics.

S. Roy Kimura, Hai Peng Hu, Anatoly M. Ruvinsky, Woody Sherman, Angelo D. Favia

J. Chem. Inf. Model., June, 2017

2015

Simulated unbound structures for benchmarking of protein docking in the Dockground resource.

Tatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser

BMC Bioinform., 2015

2012

Structure fluctuations and conformational Changes in protein binding.

Anatoly M. Ruvinsky, Tatsiana Kirys, Alexander V. Tuzikov, Ilya A. Vakser

J. Bioinform. Comput. Biol., 2012

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins.

Tatsiana Kirys, Anatoly M. Ruvinsky, Alexander V. Tuzikov, Ilya A. Vakser

BMC Bioinform., 2012

2009

The ruggedness of protein-protein energy landscape and the cutoff for 1/<i>r</i>^<i>n</i> potentials.

Anatoly M. Ruvinsky, Ilya A. Vakser

Bioinform., 2009

2007

Role of binding entropy in the refinement of protein-ligand docking predictions: Analysis based on the use of 11 scoring functions.

Anatoly M. Ruvinsky

J. Comput. Chem., 2007

Calculations of protein-ligand binding entropy of relative and overall molecular motions.

Anatoly M. Ruvinsky

J. Comput. Aided Mol. Des., 2007

2005

New and fast statistical-thermodynamic method for computation of protein-ligand binding entropy substantially improves docking accuracy.

Anatoly M. Ruvinsky, A. V. Kozintsev

J. Comput. Chem., 2005