Andreas Bender

This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.

Known people with the same name:

Bibliography

2021
DOCKSTRING: easy molecular docking yields better benchmarks for ligand design.
CoRR, 2021

2020
Identification of Intrinsic Drug Resistance and Its Biomarkers in High-Throughput Pharmacogenomic and CRISPR Screens.
Patterns, 2020

EMDIP: An Entropy Measure to Discover Important Proteins in PPI networks.
Comput. Biol. Medicine, 2020

2018
Maximizing gain in high-throughput screening using conformal prediction.
J. Cheminformatics, 2018

eMolTox: prediction of molecular toxicity with confidence.
Bioinform., 2018

2017
Maximizing Gain in HTS Screening Using Conformal Prediction.
Proceedings of the Conformal and Probabilistic Prediction and Applications, 2017

2016
Using a Human Drug Network for generating novel hypotheses about drugs.
Intell. Data Anal., 2016

2015
Using a Human Disease Network for augmenting prior knowledge about diseases.
Intell. Data Anal., 2015

2014
An EMF-based Toolkit for Creation of Domain-specific Data Services.
Proceedings of the MODELSWARD 2014 - Proceedings of the 2nd International Conference on Model-Driven Engineering and Software Development, Lisbon, Portugal, 7, 2014

2013
In silico target prediction: identification of on- and off-targets for crop protection agents.
J. Cheminformatics, 2013

Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels.
Int. J. Bioinform. Res. Appl., 2013

Computational Methods Aiding Early-Stage Drug Design (Dagstuhl Seminar 13212).
Dagstuhl Reports, 2013

A Service-oriented Framework for Integration of Domain-specific Data Models in Scientific Workflows.
Proceedings of the International Conference on Computational Science, 2013

2012
Predicting Genes Involved in Human Cancer Using Network Contextual Information.
J. Integr. Bioinform., 2012

Recognizing Pitfalls in Virtual Screening: A Critical Review.
J. Chem. Inf. Model., 2012

Molecular dynamics simulations and docking of non-nucleoside reverse transcriptase inhibitors (NNRTIs): a possible approach to personalized HIV treatment.
J. Cheminformatics, 2012

Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

2011
Collaboration-Based Function Prediction in Protein-Protein Interaction Networks.
Proceedings of the Advances in Intelligent Data Analysis X - 10th International Symposium, 2011

2010
Predicting the functions of proteins in Protein-Protein Interaction networks from global information.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

Dynamic clustering threshold reduces conformer ensemble size while maintaining a biologically relevant ensemble.
J. Comput. Aided Mol. Des., 2010

2009
SPREAD - exploiting chemical features that cause differential activity behavior.
Stat. Anal. Data Min., 2009

Alpha Shapes Applied to Molecular Shape Characterization Exhibit Novel Properties Compared to Established Shape Descriptors.
J. Chem. Inf. Model., 2009

Gaining Insight into Off-Target Mediated Effects of Drug Candidates with a Comprehensive Systems Chemical Biology Analysis.
J. Chem. Inf. Model., 2009

Characterization of Activity Landscapes Using 2D and 3D Similarity Methods: <i>Consensus Activity Cliffs</i>.
J. Chem. Inf. Model., 2009

How Similar Are Similarity Searching Methods? A Principal Component Analysis of Molecular Descriptor Space.
J. Chem. Inf. Model., 2009

2008
A Quantitative <i>bgl</i> Operon Model for <i>E. coli</i> Requires BglF Conformational Change for Sugar Transport.
Trans. Comp. Sys. Biology, 2008

Distributed Chemical Computing Using ChemStar: An Open Source Java Remote Method Invocation Architecture Applied to Large Scale Molecular Data from PubChem.
J. Chem. Inf. Model., 2008

2007
A Large Descriptor Set and a Probabilistic Kernel-Based Classifier Significantly Improve Druglikeness Classification.
J. Chem. Inf. Model., 2007

Understanding False Positives in Reporter Gene Assays: in Silico Chemogenomics Approaches To Prioritize Cell-Based HTS Data.
J. Chem. Inf. Model., 2007

Evolved Cellular Automata for Protein Secondary Structure Prediction Imitate the Determinants for Folding Observed in Nature.
Silico Biol., 2007

2006
Harvesting Chemical Information from the Internet Using a Distributed Approach: ChemXtreme.
J. Chem. Inf. Model., 2006

"Bayes Affinity Fingerprints" Improve Retrieval Rates in Virtual Screening and Define Orthogonal Bioactivity Space: When Are Multitarget Drugs a Feasible Concept?
J. Chem. Inf. Model., 2006

2005
Encoding and Decoding Graphical Chemical Structures as Two-Dimensional (PDF417) Barcodes.
J. Chem. Inf. Model., 2005

1989
On the Implementation of Elliptic Curve Cryptosystems.
Proceedings of the Advances in Cryptology, 1989


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