Andrew L. Ferguson

According to our database, Andrew L. Ferguson authored at least 9 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

GANs and Closures: Micro-Macro Consistency in Multiscale Modeling.

Ellis R. Crabtree, Juan M. Bello-Rivas, Andrew L. Ferguson, Ioannis G. Kevrekidis

Multiscale Model. Simul., September, 2023

DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces.

Michael S. Jones, Kirill Shmilovich, Andrew L. Ferguson

CoRR, 2023

2020

Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation.

Kirill Shmilovich, Rachael A. Mansbach, Hythem Sidky, Olivia E. Dunne, Sayak Subhra Panda, John D. Tovar, Andrew L. Ferguson

CoRR, 2020

2019

Capabilities and Limitations of Time-lagged Autoencoders for Slow Mode Discovery in Dynamical Systems.

Wei Chen, Hythem Sidky, Andrew L. Ferguson

CoRR, 2019

Nonlinear Discovery of Slow Molecular Modes using Hierarchical Dynamics Encoders.

Wei Chen, Hythem Sidky, Andrew L. Ferguson

CoRR, 2019

2018

Molecular enhanced sampling with autoencoders: On-the-fly collective variable discovery and accelerated free energy landscape exploration.

Wei Chen, Andrew L. Ferguson

J. Comput. Chem., 2018

2017

BayesWHAM: A Bayesian approach for free energy estimation, reweighting, and uncertainty quantification in the weighted histogram analysis method.

Andrew L. Ferguson

J. Comput. Chem., 2017

2016

Global graph matching using diffusion maps.

Jingtian Hu, Andrew L. Ferguson

Intell. Data Anal., 2016

2014

The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by <i>In Vitro</i> Testing.

Jaclyn K. Mann, John P. Barton, Andrew L. Ferguson, Saleha Omarjee, Bruce D. Walker, Arup Chakraborty, Thumbi Ndung'u

PLoS Comput. Biol., 2014