Andrzej M. Kierzek

According to our database, Andrzej M. Kierzek authored at least 11 papers between 2002 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

Simulation of multicellular populations with Petri nets and genome scale intracellular networks.

Kamil Kedzia, Wojtek Ptak, Jacek Sroka, Andrzej M. Kierzek

Sci. Comput. Program., 2018

Verification of Dynamic Behaviour in Qualitative Molecular Networks Describing Gene Regulation, Signalling and Whole-cell Metabolism.

Marek Grabowski, Grzegorz Bokota, Jacek Sroka, Andrzej M. Kierzek

Fundam. Informaticae, 2018

2016

AB-QSSPN: Integration of Agent-Based Simulation of Cellular Populations with Quasi-Steady State Simulation of Genome Scale Intracellular Networks.

Wojciech Ptak, Andrzej M. Kierzek, Jacek Sroka

Proceedings of the Application and Theory of Petri Nets and Concurrency, 2016

2013

QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells.

Ciarán P. Fisher, Nicholas J. Plant, J. Bernadette Moore, Andrzej M. Kierzek

Bioinform., 2013

2012

Equation-Free Analysis of Two-Component System Signalling Model Reveals the Emergence of Co-Existing Phenotypes in the Absence of Multistationarity.

Rebecca B. Hoyle, Daniele Avitabile, Andrzej M. Kierzek

PLoS Comput. Biol., 2012

2011

Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of <i>M. tuberculosis</i>.

Bhushan K. Bonde, Dany J. V. Beste, Emma Laing, Andrzej M. Kierzek, Johnjoe McFadden

PLoS Comput. Biol., 2011

Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface.

Jacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwozdz, Dariusz Leniowski, Jakub Lacki, Mateusz Markowski, Claudio Avignone-Rossa, Michael E. Bushell, Johnjoe McFadden, Andrzej M. Kierzek

BMC Bioinform., 2011

<i>CalcTav</i> - integration of a spreadsheet and <i>Taverna</i> workbench.

Jacek Sroka, Lukasz Krupa, Andrzej M. Kierzek, Jerzy Tyszkiewicz

Bioinform., 2011

SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.

Albert Gevorgyan, Michael E. Bushell, Claudio Avignone-Rossa, Andrzej M. Kierzek

Bioinform., 2011

2006

XQTav: an XQuery processor for Taverna environment.

Jacek Sroka, Grzegorz Kaczor, Jerzy Tyszkiewicz, Andrzej M. Kierzek

Bioinform., 2006

2002

STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.

Andrzej M. Kierzek

Bioinform., 2002