Anthony J. Kusalik

Orcid: 0000-0001-9278-8859

Affiliations:
  • University of Saskatchewan, Canada


According to our database1, Anthony J. Kusalik authored at least 56 papers between 1984 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Online presence:

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Bibliography

2023
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2021
EPIphany - A Platform for Analysis and Visualization of Peptide Immunoarray Data.
Frontiers Bioinform., 2021

2020
MDIPA: a microRNA-drug interaction prediction approach based on non-negative matrix factorization.
Bioinform., 2020

2019
Measuring consistency among gene set analysis methods: A systematic study.
J. Bioinform. Comput. Biol., 2019

Effects of input data quantity on genome-wide association studies (GWAS).
Int. J. Data Min. Bioinform., 2019

Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection.
BMC Bioinform., 2019

Method Choice in Gene Set Analysis Has Important Consequences for Analysis Outcome.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

Gene Set Databases: A Fountain of Knowledge or a Siren Call?
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Comparing Four Genome-Wide Association Study (GWAS) Programs with Varied Input Data Quantity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Sample Size and Reproducibility of Gene Set Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2015
Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee).
Briefings Bioinform., 2015

2014
Equivalent input produces different output in the UniFrac significance test.
BMC Bioinform., 2014

A better sequence-read simulator program for metagenomics.
BMC Bioinform., 2014

NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

NovoPair: De novo peptide sequencing for tandem mass spectra pair.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

The UniFrac significance test generates different outputs given semantically equivalent inputs.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights.
Bioinform., 2013

DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites.
Bioinform., 2013

A multi-edge graph based de novo peptide sequencing method for HCD spectra.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2011
Computational prediction of eukaryotic phosphorylation sites.
Bioinform., 2011

2010
The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand.
BMC Bioinform., 2010

2009
Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks.
EURASIP J. Bioinform. Syst. Biol., 2009

2006
Optimally-connected Hidden Markov Models for Predicting Mhc-binding Peptides.
J. Bioinform. Comput. Biol., 2006

Determination of the minimum number of microarray experiments for discovery of gene expression patterns.
BMC Bioinform., 2006

On Determination of Minimum Sample Size for Discovery of Temporal Gene Expression Patterns.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006

2005
Dynamic Model-based Clustering for Time-course Gene Expression Data.
J. Bioinform. Comput. Biol., 2005

Genetic Weighted K-means for Large-Scale Clustering Problems.
Proceedings of the Eighteenth International Florida Artificial Intelligence Research Society Conference, 2005

2004
Modeling Gene Expression from Microarray Expression Data with State-Space Equations.
Proceedings of the Biocomputing 2004, 2004

State-Space Model for Gene Regulatory Networks with Time Delays.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

Model-Based Clustering with Genes Expression Dynamics for Time-Course Gene Expression Data.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Determination of the Minimum Sample Size in Microarray Experiments to Cluster Genes Using K-means Clustering.
Proceedings of the 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 2003

An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level.
Proceedings of the 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 2003

A Genetic K-means Clustering Algorithm Applied to Gene Expression Data.
Proceedings of the Advances in Artificial Intelligence, 2003

2001
Proceedings of the Eleventh Workshop on Logic Programming Environments (WLPE'01)
CoRR, 2001

2000
Area-Efficient VLSI Layouts for Binary Hypercubes.
IEEE Trans. Computers, 2000

1999
Preface.
Proceedings of the Tenth Workshop on Logic Programming Environments, 1999

An Implementation Architecture for Orthogonally Persistent Deductive Object-Oriented Database Systems.
Proceedings of the 1999 International Database Engineering and Applications Symposium, 1999

1998
Icola - Incremental Constraint-Based Graphics for Visualization.
Constraints An Int. J., 1998

1997
Application of a Multi-Structure Neural Network (MSNN) to Sorting Pistachio Nuts.
Int. J. Neural Syst., 1997

Resolving Color Conflicts During Color Unification.
Proceedings of the 8th Workshop on Logic Programming Environments, 1997

Visual Metaphors fro Understanding Logic Program Execution.
Proceedings of the Graphics Interface 1997 Conference, 1997

1996
Visualizing Parallel Logic Program Execution for Performance Tuning.
Proceedings of the Logic Programming, 1996

Colour Tagging for Prolog Visualization (Poster Abstract).
Proceedings of the Logic Programming, 1996

1994
High-Level Visualisation of Parallel Logic Program Execution.
Proceedings of the PARLE '94: Parallel Architectures and Languages Europe, 1994

1993
Programmer-Oriented Visualization of Parallel Logic Program Execution.
Proceedings of the 5th Workshop on Logic Programming Environments (LPE 1993), 1993

A Constraint-Based Declarative Display Description Language for Visualization.
Proceedings of the 5th Workshop on Logic Programming Environments (LPE 1993), 1993

Towards Generalized Visualization Support for Logic Programming.
Proceedings of the Logic Programming, 1993

1990
Secondary storage in a concurrent logic programming environment.
J. Syst. Softw., 1990

1988
Improving First-Class Array Expressions Using Prolog.
Proceedings of the Logic Programming, 1988

1986
Specification and Initialization of a Logic Computer System.
New Gener. Comput., 1986

A Logical Treatment of Secondary Storage.
Proceedings of the 1986 Symposium on Logic Programming, 1986

1984
Serialization of Process Reduction in Concurrent Prolog.
New Gener. Comput., 1984

Bounded-Wait Merge in Shapiro's Concurrent Prolog.
New Gener. Comput., 1984


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