Anton Bushuiev

According to our database, Anton Bushuiev authored at least 6 papers between 2024 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

An evaluation methodology for machine learning-based tandem mass spectra similarity prediction.

Michael Strobel, Alberto Gil-de-la-Fuente, Mohammad Reza Shahneh, Yasin El Abiead, Roman Bushuiev, Anton Bushuiev, Tomás Pluskal, Mingxun Wang

BMC Bioinform., December, 2025

2024

Machine Learning for Protein-Protein and Protein-Ligand Interactions (Dagstuhl Seminar 24451).

Anne-Florence Bitbol, Jennifer Listgarten, Tomás Pluskal, Anton Bushuiev, Roman Bushuiev

Dagstuhl Reports, 2024

Training on test proteins improves fitness, structure, and function prediction.

Anton Bushuiev, Roman Bushuiev, Nikola Zadorozhny, Raman Samusevich, Hannes Stärk, Jirí Sedlár, Tomás Pluskal, Josef Sivic

CoRR, 2024

Revealing data leakage in protein interaction benchmarks.

Anton Bushuiev, Roman Bushuiev, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic

CoRR, 2024

MassSpecGym: A benchmark for the discovery and identification of molecules.

Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, Bo Wang, David S. Wishart, Liping Liu, Juho Rousu, Wout Bittremieux, Hannes Rost, Tytus D. Mak, Soha Hassoun, Florian Huber, Justin J. J. van der Hooft, Michael A. Stravs, Sebastian Böcker, Josef Sivic, Tomás Pluskal

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

Learning to design protein-protein interactions with enhanced generalization.

Anton Bushuiev, Roman Bushuiev, Petr Kouba, Anatolii Filkin, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic

Proceedings of the Twelfth International Conference on Learning Representations, 2024