Aoyun Geng

According to our database, Aoyun Geng authored at least 10 papers between 2024 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

DeepNhKcr: Explainable Deep Learning Framework for the Prediction of Crotonylation Sites of Non-Histone Lysine in Plants Based on Pre-Trained Protein Language Model.

Jinwei Wang, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Shankai Yan, Leyi Wei, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui

IEEE Trans. Comput. Biol. Bioinform., 2026

CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction.

Ziyuan Yan, Aoyun Geng, Yazi Li, Jiajing Wang, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Feifei Cui

Neural Networks, 2026

Protein Solubility Prediction Using Fused Graph Convolutional Networks and Improved Attention Networks with AlphaFold3-Derived Features.

Guanjie Song, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Feifei Cui, Leyi Wei, Quan Zou, Zilong Zhang

J. Chem. Inf. Model., 2026

TLAGC: Taylor Linear Attention-Guided Graph Convolutions for Revealing Spatial Domains in Spatial Multi-Omics Data.

Aoyun Geng, Chunyan Cui, Yunyun Su, Zhenjie Luo, Feifei Cui, Zilong Zhang

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025

DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms.

Qianmao Wen, Aoyun Geng, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui

J. Chem. Inf. Model., 2025

AcidProNet: Acidophilic Protein Classification via DCGAN-GP-Based Data Augmentation and Parameter-Shared Mixture-of-Experts Transformer.

Jiaxing Song, Aoyun Geng, Qianmao Wen, Junlin Xu, Yajie Meng, Feifei Cui, Quan Zou, Leyi Wei, Zilong Zhang

J. Chem. Inf. Model., 2025

AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction.

Yuanhao Li, Aoyun Geng, Zheyu Zhou, Feifei Cui, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Qingchen Zhang, Zilong Zhang

J. Chem. Inf. Model., 2025

ACP-CLB: An Anticancer Peptide Prediction Model Based on Multichannel Discriminative Processing and Integration of Large Pretrained Protein Language Models.

Aoyun Geng, Zhenjie Luo, Aohan Li, Zilong Zhang, Quan Zou, Leyi Wei, Feifei Cui

J. Chem. Inf. Model., 2025

RTCDB: A Multi-Omics Database Supporting Research and Discovery in Rare Tumor Oncology.

Yunyun Su, Binlu Yang, Aoyun Geng, Yuxuan Chen, Zilong Zhang, Feifei Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

2024

MultiFeatVotPIP: a voting-based ensemble learning framework for predicting proinflammatory peptides.

Chaorui Yan, Aoyun Geng, Zhuoyu Pan, Zilong Zhang, Feifei Cui

Briefings Bioinform., November, 2024