Craig J. Benham

According to our database, Craig J. Benham authored at least 23 papers between 1995 and 2015.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2015

SIST: stress-induced structural transitions in superhelical DNA.

Dina Zhabinskaya, Sally Madden, Craig J. Benham

Bioinform., 2015

2012

Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA.

Dina Zhabinskaya, Craig J. Benham

PLoS Comput. Biol., 2012

2011

Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA.

Dina Zhabinskaya, Craig J. Benham

PLoS Comput. Biol., 2011

2008

Superhelical Destabilization in Regulatory Regions of Stress Response Genes.

Huiquan Wang, Craig J. Benham

PLoS Comput. Biol., 2008

2007

OriDB: a DNA replication origin database.

Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson

Nucleic Acids Res., 2007

2006

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes.

Huiquan Wang, Miroslava Kaloper, Craig J. Benham

Nucleic Acids Res., 2006

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.

Huiquan Wang, Craig J. Benham

BMC Bioinform., 2006

2005

Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins.

Prashanth Ak, Craig J. Benham

PLoS Comput. Biol., 2005

Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties.

Huiquan Wang, Craig J. Benham

Proceedings of the Systems Biology and Regulatory Genomics, 2005

2004

The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences.

Craig J. Benham, Chengpeng Bi

J. Comput. Biol., 2004

Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes.

Huiquan Wang, Craig J. Benham

Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003

The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics.

Chengpeng Bi, Craig J. Benham

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2001

Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation.

Craig J. Benham

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

In Silico Biology: The emergence of a new biological methodology.

Craig J. Benham

Proceedings of the 5th Hellenic-European Conference on Computer Mathematics and its Applications (HERCMA-01), 2001

Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches.

A. Knopp, Sandra Götze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster.

Sandra Götze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

1998

A formally exact method to numerically analyze local denaturation in superhelical DNA.

Richard M. Fye, Craig J. Benham

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

The topologically driven strand separation transition in DNA - methods of analysis and biological significance.

Craig J. Benham

Proceedings of the Mathematical Support for Molecular Biology, 1998

1997

DNA Strand Separation Prediction: A Parallel Implementation.

Gabriela Hristescu, Craig J. Benham, Martin Farach

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1997

1996

Computation of DNA structural variability - a new predictor of DNA regulatory regions.

Craig J. Benham

Comput. Appl. Biosci., 1996

Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory Regions.

Craig J. Benham

Proceedings of the German Conference on Bioinformatics, 1996

1995

Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility.

Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy J. Warnow

J. Comput. Biol., 1995

Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility.

Craig J. Benham, Sampath Kannan, Tandy J. Warnow

Proceedings of the Combinatorial Pattern Matching, 6th Annual Symposium, 1995