Cristina Almagro-Pérez

According to our database, Cristina Almagro-Pérez authored at least 8 papers between 2024 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Towards Spatial Transcriptomics-driven Pathology Foundation Models.

Konstantin Hemker, Andrew H. Song, Cristina Almagro-Pérez, Guillaume Jaume, Sophia J. Wagner, Anurag Vaidya, Nikola Simidjievski, Mateja Jamnik, Faisal Mahmood

CoRR, February, 2026

2025

A Foundation Model for Spatial Proteomics.

Muhammad Shaban, Yuzhou Chang, Huaying Qiu, Yao Yu Yeo, Andrew H. Song, Guillaume Jaume, Yuchen Wang, Luca L. Weishaupt, Tong Ding, Anurag Vaidya, Abdallah Lamane, Daniel Shao, Mohammed Zidane, Yunhao Bai, Paige McCallum, Shuli Luo, Wenrui Wu, Yang Wang, Precious Cramer, Chi Ngai Chan, Pierre Stéphan, Johanna Schaffenrath, Jia Le Lee, Hendrik A. Michel, Caiwei Tian, Cristina Almagro-Pérez, Sophia J. Wagner, Sharifa Sahai, Ming Y. Lu, Richard J. Chen, Andrew Zhang, Mark Edward M. Gonzales, Ahmad Makky, Jia-Ying Joey Lee, Hao Cheng, Nourhan El Ahmar, Sayed Matar, Maximilian Haist, Darci Phillips, Yuqi Tan, Garry P. Nolan, W. Richard Burack, Jacob D. Estes, Jonathan T. C. Liu, Toni K. Choueiri, Neeraj Agarwal, Marc Barry, Scott J. Rodig, Long Phi Le, Georg Gerber, Christian M. Schürch, Fabian J. Theis, Youn H. Kim, Joe Yeong, Sabina Signoretti, Brooke E. Howitt, Lit-Hsin Loo, Qin Ma, Sizun Jiang, Faisal Mahmood

CoRR, June, 2025

AI-driven 3D Spatial Transcriptomics.

Cristina Almagro-Pérez, Andrew H. Song, Luca L. Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F. K. Williamson, Konstantin Hemker, Ming Y. Lu, Kritika Singh, Bowen Chen, Long Phi Le, Alexander S. Baras, Sizun Jiang, Ali Bashashati, Jonathan T. C. Liu, Faisal Mahmood

CoRR, February, 2025

Molecular-driven Foundation Model for Oncologic Pathology.

Anurag Vaidya, Andrew Zhang, Guillaume Jaume, Andrew H. Song, Tong Ding, Sophia J. Wagner, Ming Y. Lu, Paul Doucet, Harry Robertson, Cristina Almagro-Pérez, Richard J. Chen, Dina ElHarouni, Georges Ayoub, Connor Bossi, Keith L. Ligon, Georg Gerber, Long Phi Le, Faisal Mahmood

CoRR, January, 2025

Automated Detection of BK Virus in H&E Whole-Slide Images Using Weakly-Supervised Deep Learning and Interpretable Morphological Biomarkers.

Sharifa Sahai, Ana D. Ramos-Guerra, Cristina Almagro-Pérez, Guillaume Jaume, Andrew Zhang, Helmut Rennke, Astrid Weins, Juan E. Ortuño, María J. Ledesma-Carbayo, Faisal Mahmood

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2025, 2025

2024

3D genomic mapping reveals multifocality of human pancreatic precancers.

Alicia M. Braxton, Ashley L. Kiemen, Mia P. Grahn, André Forjaz, Jeeun Parksong, Jaanvi Mahesh Babu, Jiaying Lai, Lily Zheng, Noushin Niknafs, Liping Jiang, Haixia Cheng, Qianqian Song, Rebecca Reichel, Sarah Graham, Alexander Damanakis, Catherine G. Fischer, Stephanie Mou, Cameron Metz, Julie Granger, Xiao-Ding Liu, Niklas Bachmann, Yutong Zhu, Yunzhou Liu, Cristina Almagro-Pérez, Ann Chenyu Jiang, Jeonghyun Yoo, Bridgette Kim, Scott Du, Eli Foster, Jocelyn Y. Hsu, Paula Andreu Rivera, Linda C. Chu, Fengze Liu, Elliot K. Fishman, Alan L. Yuille, Nicholas J. Roberts, Elizabeth D. Thompson, Robert B. Scharpf, Toby C. Cornish, Yuchen Jiao, Rachel Karchin, Ralph H. Hruban, Pei-Hsun Wu, Denis Wirtz, Laura D. Wood

Nat., 2024

Multimodal Whole Slide Foundation Model for Pathology.

Tong Ding, Sophia J. Wagner, Andrew H. Song, Richard J. Chen, Ming Y. Lu, Andrew Zhang, Anurag J. Vaidya, Guillaume Jaume, Muhammad Shaban, Ahrong Kim, Drew F. K. Williamson, Bowen Chen, Cristina Almagro-Pérez, Paul Doucet, Sharifa Sahai, Chengkuan Chen, Daisuke Komura, Akihiro Kawabe, Shumpei Ishikawa, Georg Gerber, Tingying Peng, Long Phi Le, Faisal Mahmood

CoRR, 2024

HEST-1k: A Dataset For Spatial Transcriptomics and Histology Image Analysis.

Guillaume Jaume, Paul Doucet, Andrew H. Song, Ming Yang Lu, Cristina Almagro-Pérez, Sophia J. Wagner, Anurag Vaidya, Richard J. Chen, Drew F. K. Williamson, Ahrong Kim, Faisal Mahmood

Proceedings of the Advances in Neural Information Processing Systems 37: Annual Conference on Neural Information Processing Systems 2024, 2024