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Daniel Valenzuela

Orcid: 0000-0001-8244-2299

Affiliations:
  • University of Helsinki, Finland
  • University of Chile, Chile (former)


According to our database1, Daniel Valenzuela authored at least 20 papers between 2011 and 2021.

Collaborative distances:

Timeline

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Online presence:

On csauthors.net:

Bibliography

2021
Founder reconstruction enables scalable and seamless pangenomic analysis.
[BibTeX]
[DOI]
Tuukka Norri
,
Bastien Cazaux
,
Saska Dönges
,
Daniel Valenzuela
,
Veli Mäkinen
Bioinform., 2021

Lempel-Ziv Parsing for Sequences of Blocks.
[BibTeX]
[DOI]
Dmitry Kosolobov
,
Daniel Valenzuela
Algorithms, 2021

2020
Lempel-Ziv-Like Parsing in Small Space.
[BibTeX]
[DOI]
Dmitry Kosolobov
,
Daniel Valenzuela
,
Gonzalo Navarro
,
Simon J. Puglisi
Algorithmica, 2020

Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark.
[BibTeX]
[DOI]
Altti Ilari Maarala
,
Ossi Arasalo
,
Daniel Valenzuela
,
Keijo Heljanko
,
Veli Mäkinen
Proceedings of the Big Data - BigData 2020, 2020

2019
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics.
[BibTeX]
[DOI]
Romeo Rizzi
,
Massimo Cairo
,
Veli Mäkinen
,
Alexandru I. Tomescu
,
Daniel Valenzuela
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2018
Towards pan-genome read alignment to improve variation calling.
[BibTeX]
[DOI]
Daniel Valenzuela
,
Tuukka Norri
,
Niko Välimäki
,
Esa Pitkänen
,
Veli Mäkinen
BMC Genom., 2018

2017
Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era.
[BibTeX]
[DOI]
Daniel Valenzuela
PhD thesis, 2017

Compressed Spaced Suffix Arrays.
[BibTeX]
[DOI]
Travis Gagie
,
Giovanni Manzini
,
Daniel Valenzuela
Math. Comput. Sci., 2017

Interval scheduling maximizing minimum coverage.
[BibTeX]
[DOI]
Veli Mäkinen
,
Valeria Staneva
,
Alexandru I. Tomescu
,
Daniel Valenzuela
,
Sebastian Wilzbach
Discret. Appl. Math., 2017

2016
Compressed Suffix Array.
[BibTeX]
[DOI]
Djamal Belazzougui
,
Veli Mäkinen
,
Daniel Valenzuela
Encyclopedia of Algorithms, 2016

Diploid Alignment is NP-hard.
[BibTeX]
[DOI]
Romeo Rizzi
,
Massimo Cairo
,
Veli Mäkinen
,
Daniel Valenzuela
CoRR, 2016

CHICO: A Compressed Hybrid Index for Repetitive Collections.
[BibTeX]
[DOI]
Daniel Valenzuela
Proceedings of the Experimental Algorithms - 15th International Symposium, 2016

Analyzing Relative Lempel-Ziv Reference Construction.
[BibTeX]
[DOI]
Travis Gagie
,
Simon J. Puglisi
,
Daniel Valenzuela
Proceedings of the String Processing and Information Retrieval, 2016

2015
Interval scheduling maximizing minimum coverage.
[BibTeX]
[DOI]
Veli Mäkinen
,
Valeria Staneva
,
Alexandru I. Tomescu
,
Daniel Valenzuela
CoRR, 2015

Diploid Alignments and Haplotyping.
[BibTeX]
[DOI]
Veli Mäkinen
,
Daniel Valenzuela
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2014
General Document Retrieval in Compact Space.
[BibTeX]
[DOI]
Gonzalo Navarro
,
Simon J. Puglisi
,
Daniel Valenzuela
ACM J. Exp. Algorithmics, 2014

2013
Improved compressed indexes for full-text document retrieval.
[BibTeX]
[DOI]
Djamal Belazzougui
,
Gonzalo Navarro
,
Daniel Valenzuela
J. Discrete Algorithms, 2013

2012
Space-Efficient Top-k Document Retrieval.
[BibTeX]
[DOI]
Gonzalo Navarro
,
Daniel Valenzuela
Proceedings of the Experimental Algorithms - 11th International Symposium, 2012

2011
Practical Top-K Document Retrieval in Reduced Space
[BibTeX]
[DOI]
Gonzalo Navarro
,
Daniel Valenzuela
CoRR, 2011

Practical Compressed Document Retrieval.
[BibTeX]
[DOI]
Gonzalo Navarro
,
Simon J. Puglisi
,
Daniel Valenzuela
Proceedings of the Experimental Algorithms - 10th International Symposium, 2011


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