David Perahia

According to our database, David Perahia authored at least 6 papers between 2011 and 2021.

Collaborative distances:

• Dijkstra number of six.
• Erdős number of five.

2021

Multimolecular complexes of the phosphodiester anion with Zn(II) or Mg(II) and water molecules - Preliminary validations of a polarizable potential by ab initio quantum chemistry.

Nohad Gresh, David Perahia

J. Comput. Chem., 2021

2020

A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit).

Mauricio G. S. Costa, Charline Fagnen, Catherine Vénien-Bryan, David Perahia

J. Chem. Inf. Model., 2020

2016

Complexes of a Zn-metalloenzyme binding site with hydroxamate-containing ligands. A case for detailed benchmarkings of polarizable molecular mechanics/dynamics potentials when the experimental binding structure is unknown.

Nohad Gresh, David Perahia, Benoit de Courcy, Johanna Foret, Celine Roux, Lea El-Khoury, Jean-Philip Piquemal, Laurent Salmon

J. Comput. Chem., 2016

2014

Polarizable molecular mechanics studies of Cu(I)/Zn(II) superoxide dismutase: Bimetallic binding site and structured waters.

Nohad Gresh, Krystel El Hage, David Perahia, Jean-Philip Piquemal, Catherine Berthomieu, Dorothée Berthomieu

J. Comput. Chem., 2014

2012

GANM: A protein-ligand docking approach based on genetic algorithm and normal modes.

Angélica Nakagawa Lima, Eric Allison Philot, David Perahia, Antonio Sérgio Kimus Braz, Luis P. B. Scott

Appl. Math. Comput., 2012

2011

Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms.

Elodie Laine, Isaure Chauvot de Beauchêne, David Perahia, Christian Auclair, Luba Tchertanov

PLoS Comput. Biol., 2011