Dmitry Filimonov

According to our database, Dmitry Filimonov authored at least 32 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

HGMMX: Host Gut Microbiota Metabolism Xenobiotics Database.

Anton S. Kolodnitsky, Nikita Ionov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., November, 2023

Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors.

Anton Zadorozhny, Anton Smirnov, Dmitry Filimonov, Alexey Lagunin

Bioinform., August, 2023

Phyto4Health: Database of Phytocomponents from Russian Pharmacopoeia Plants.

Nikita Ionov, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., April, 2023

2022

Chemical named entity recognition in the texts of scientific publications using the naïve Bayes classifier approach.

Olga A. Tarasova, Anastasia V. Rudik, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov

J. Cheminformatics, 2022

The method predicting interaction between protein targets and small-molecular ligands with the wide applicability domain.

Dmitry A. Karasev, Boris Sobolev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

Comput. Biol. Chem., 2022

2021

Extraction of Data on Parent Compounds and Their Metabolites from Texts of Scientific Abstracts.

Olga A. Tarasova, Nadezhda Yu. Biziukova, Anastassia V. Rudik, Alexander V. Dmitriev, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., 2021

2020

Computational Approaches To Identify A Hidden Pharmacological Potential In Large Chemical Libraries.

Dmitry S. Druzhilovskiy, Leonid A. Stolbov, Polina I. Savosina, Pavel V. Pogodin, Dmitry Filimonov, Alexander V. Veselovsky, Karen Stefanisko, Nadya I. Tarasova, Marc C. Nicklaus, Vladimir Poroikov

Supercomput. Front. Innov., 2020

AntiHIV-Pred: web-resource for in silico prediction of anti-HIV/AIDS activity.

Leonid A. Stolbov, Dmitry S. Druzhilovskiy, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus

Bioinform., 2020

2019

Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions.

Sergey Ivanov, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

PLoS Comput. Biol., 2019

Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications.

Olga A. Tarasova, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus

J. Chem. Inf. Model., 2019

AntiBac-Pred: A Web Application for Predicting Antibacterial Activity of Chemical Compounds.

Pavel V. Pogodin, Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., 2019

Metatox - Web application for generation of metabolic pathways and toxicity estimation.

Anastasiya V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

J. Bioinform. Comput. Biol., 2019

2018

ADVERPred-Web Service for Prediction of Adverse Effects of Drugs.

Sergey Ivanov, Alexey Lagunin, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., 2018

ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction.

Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov

Bioinform., 2018

2017

MetaTox: Web Application for Predicting Structure and Toxicity of Xenobiotics' Metabolites.

Anastasia V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Dmitry S. Druzhilovskiy, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., 2017

PASS-based approach to predict HIV-1 reverse transcriptase resistance.

Olga A. Tarasova, Dmitry Filimonov, Vladimir Poroikov

J. Bioinform. Comput. Biol., 2017

2016

Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics.

Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

J. Cheminformatics, 2016

2015

QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors.

Olga A. Tarasova, Aleksandra F. Urusova, Dmitry Filimonov, Marc C. Nicklaus, Alexey V. Zakharov, Vladimir Poroikov

J. Chem. Inf. Model., 2015

SOMP: web server for <i>in silico</i> prediction of sites of metabolism for drug-like compounds.

Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

Bioinform., 2015

2014

Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm.

Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov

J. Chem. Inf. Model., 2014

2013

DIGEP-Pred: web service for <i>in silico</i> prediction of drug-induced gene expression profiles based on structural formula.

Alexey Lagunin, Sergey Ivanov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov

Bioinform., 2013

2010

Collaborative development of predictive toxicology applications.

Barry J. Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Kramer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir Poroikov, Dmitry Filimonov, Alexey V. Zakharov, Alexey Lagunin, Tatyana Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry S. Druzhilovskiy, Sunil Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher

J. Cheminformatics, 2010

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates.

Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey V. Zakharov, Olga Koborova, Alexander E. Kel, Vladimir Poroikov

BMC Bioinform., 2010

2008

Recognition of protein Function Using the Local Similarity.

Kirill Alexandrov, Boris Sobolev, Dmitry Filimonov, Vladimir Poroikov

J. Bioinform. Comput. Biol., 2008

2005

Why relevant chemical information cannot be exchanged without disclosing structures.

Dmitry Filimonov, Vladimir Poroikov

J. Comput. Aided Mol. Des., 2005

2004

A New Statistical Approach to Predicting Aromatic Hydroxylation Sites. Comparison with Model-Based Approaches.

Yulia V. Borodina, Anastasia V. Rudik, Dmitrii Filimonov, N. Kharchevnikova, Alexander V. Dmitriev, V. Blinova, Vladimir Poroikov

J. Chem. Inf. Model., 2004

2003

PASS Biological Activity Spectrum Predictions in the Enhanced Open NCI Database Browser.

Vladimir Poroikov, Dmitrii Filimonov, Wolf-Dietrich Ihlenfeldt, Tatyana Gloriozova, Alexey Lagunin, Yulia V. Borodina, Alla Stepanchikova, Marc C. Nicklaus

J. Chem. Inf. Comput. Sci., 2003

Predicting Biotransformation Potential from Molecular Structure.

Yulia V. Borodina, A. Sadym, Dmitrii Filimonov, V. Blinova, Alexander V. Dmitriev, Vladimir Poroikov

J. Chem. Inf. Comput. Sci., 2003

2002

How to acquire new biological activities in old compounds by computer prediction.

Vladimir Poroikov, Dmitrii Filimonov

J. Comput. Aided Mol. Des., 2002

2000

Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds.

Vladimir Poroikov, Dmitrii Filimonov, Yulia V. Borodina, A. A. Lagunin, A. Kos

J. Chem. Inf. Comput. Sci., 2000

PASS: prediction of activity spectra for biologically active substances.

Alexey Lagunin, Alla Stepanchikova, Dmitrii Filimonov, Vladimir Poroikov

Bioinform., 2000

1999

Chemical Similarity Assessment through Multilevel Neighborhoods of Atoms: Definition and Comparison with the Other Descriptors.

Dmitrii Filimonov, Vladimir Poroikov, Yulia V. Borodina, Tatyana Gloriozova

J. Chem. Inf. Comput. Sci., 1999