Emmanuel Noutahi

According to our database, Emmanuel Noutahi authored at least 21 papers between 2016 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

SeedER: Seed-and-Expand Retrieval from Knowledge Graphs.

Hamed Shirzad, Frederik Wenkel, Dominique Beaini, Danica J. Sutherland, Emmanuel Noutahi

CoRR, May, 2026

Towards Autonomous Mechanistic Reasoning in Virtual Cells.

Yunhui Jang, Lu Zhu, Jake Fawkes, Alisandra Kaye Denton, Dominique Beaini, Emmanuel Noutahi

CoRR, April, 2026

Elucidating the Design Space of Flow Matching for Cellular Microscopy.

Charles Jones, Emmanuel Noutahi, Jason S. Hartford, Cian Eastwood

CoRR, March, 2026

2025

Conditional Chemical Language Models are Versatile Tools in Drug Discovery.

Lu Zhu, Emmanuel Noutahi

CoRR, July, 2025

TxPert: Leveraging Biochemical Relationships for Out-of-Distribution Transcriptomic Perturbation Prediction.

Frederik Wenkel, Wilson Tu, Cassandra Masschelein, Hamed Shirzad, Cian Eastwood, Shawn Whitfield, Ihab Bendidi, Craig Russell, Liam Hodgson, Yassir El Mesbahi, Jiarui Ding, Marta M. Fay, Berton Earnshaw, Emmanuel Noutahi, Alisandra Kaye Denton

CoRR, May, 2025

Virtual Cells: Predict, Explain, Discover.

Emmanuel Noutahi, Jason S. Hartford, Prudencio Tossou, Shawn Whitfield, Alisandra Kaye Denton, Cas Wognum, Kristina Ulicna, Michael Craig, Jonathan Hsu, Michael Cuccarese, Emmanuel Bengio, Dominique Beaini, Christopher Gibson, Daniel Cohen, Berton Earnshaw

CoRR, May, 2025

Graph and Simplicial Complex Prediction Gaussian Process via the Hodgelet Representations.

Mathieu Alain, So Takao, Xiaowen Dong, Bastian Rieck, Emmanuel Noutahi

CoRR, May, 2025

A Cross Modal Knowledge Distillation & Data Augmentation Recipe for Improving Transcriptomics Representations through Morphological Features.

Ihab Bendidi, Yassir El Mesbahi, Alisandra Kaye Denton, Karush Suri, Kian Kenyon-Dean, Auguste Genovesio, Emmanuel Noutahi

Proceedings of the Forty-second International Conference on Machine Learning, 2025

2024

Real-World Molecular Out-Of-Distribution: Specification and Investigation.

Prudencio Tossou, Cas Wognum, Michael Craig, Hadrien Mary, Emmanuel Noutahi

J. Chem. Inf. Model., 2024

SAFE setup for generative molecular design.

Yassir El Mesbahi, Emmanuel Noutahi

CoRR, 2024

Benchmarking Transcriptomics Foundation Models for Perturbation Analysis : one PCA still rules them all.

Ihab Bendidi, Shawn Whitfield, Kian Kenyon-Dean, Hanene Ben Yedder, Yassir El Mesbahi, Emmanuel Noutahi, Alisandra Kaye Denton

CoRR, 2024

Graph Classification Gaussian Processes via Hodgelet Spectral Features.

Mathieu Alain, So Takao, Xiaowen Dong, Bastian Rieck, Emmanuel Noutahi

CoRR, 2024

2023

Role of Structural and Conformational Diversity for Machine Learning Potentials.

Nikhil Shenoy, Prudencio Tossou, Emmanuel Noutahi, Hadrien Mary, Dominique Beaini, Jiarui Ding

CoRR, 2023

Gotta be SAFE: A New Framework for Molecular Design.

Emmanuel Noutahi, Cristian Gabellini, Michael Craig, Jonathan S. C. Lim, Prudencio Tossou

CoRR, 2023

2020

Molecular Design in Synthetically Accessible Chemical Space via Deep Reinforcement Learning.

Julien Horwood, Emmanuel Noutahi

CoRR, 2020

Evolution through segmental duplications and losses: a Super-Reconciliation approach.

Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos

Algorithms Mol. Biol., 2020

2019

Towards Interpretable Sparse Graph Representation Learning with Laplacian Pooling.

Emmanuel Noutahi, Dominique Beaini, Julien Horwood, Prudencio Tossou

CoRR, 2019

2018

GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.

Emmanuel Noutahi, Nadia El-Mabrouk

BMC Genom., 2018

Reconstructing the History of Syntenies Through Super-Reconciliation.

Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos

Proceedings of the Comparative Genomics - 16th International Conference, 2018

2017

CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.

Emmanuel Noutahi, Virginie Calderon, Mathieu Blanchette, B. Franz Lang, Nadia El-Mabrouk

Bioinform., 2017

2016

Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost.

Manuel Lafond, Emmanuel Noutahi, Nadia El-Mabrouk

Proceedings of the 27th Annual Symposium on Combinatorial Pattern Matching, 2016