Fusheng Wang

Orcid: 0000-0002-9369-9361

Affiliations:
  • Stony Brook University, Department of Biomedical Informatics, NY, USA
  • Emory University, Department of Biomedical Informatics, Atlanta, GA, USA
  • Siemens Corporate Research, Princeton, NJ, USA
  • University of California, Los Angeles, CA, USA (PhD 2004)


According to our database1, Fusheng Wang authored at least 163 papers between 2002 and 2024.

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Bibliography

2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification.
CoRR, 2024

2023
Self-supervised semantic segmentation of retinal pigment epithelium cells in flatmount fluorescent microscopy images.
Bioinform., April, 2023

An integrated LSTM-HeteroRGNN model for interpretable opioid overdose risk prediction.
Artif. Intell. Medicine, January, 2023

Enhancing Clinical Predictive Modeling through Model Complexity-Driven Class Proportion Tuning for Class Imbalanced Data: An Empirical Study on Opioid Overdose Prediction.
CoRR, 2023

GlanceWriter: Writing Text by Glancing Over Letters with Gaze.
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, 2023

2022
Efficient 3D Spatial Queries for Complex Objects.
ACM Trans. Spatial Algorithms Syst., June, 2022

Taking a Respite from Representation Learning for Molecular Property Prediction.
CoRR, 2022

A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction.
CoRR, 2022

Artificial intelligence based liver portal tract region identification and quantification with transplant biopsy whole-slide images.
Comput. Biol. Medicine, 2022

MultiHeadGAN: A deep learning method for low contrast retinal pigment epithelium cell segmentation with fluorescent flatmount microscopy images.
Comput. Biol. Medicine, 2022

Virtual liver needle biopsy from reconstructed three-dimensional histopathological images: Quantification of sampling error.
Comput. Biol. Medicine, 2022

A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images.
Bioinform., 2022

Artificial intelligence in drug discovery: applications and techniques.
Briefings Bioinform., 2022

EyeSayCorrect: Eye Gaze and Voice Based Hands-free Text Correction for Mobile Devices.
Proceedings of the IUI 2022: 27th International Conference on Intelligent User Interfaces, Helsinki, Finland, March 22, 2022

Real-time spatial registration for 3D human atlas.
Proceedings of the 10th ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2022

SPEAR-board: cross-platform interactive spatio-temporal big data analytics.
Proceedings of the 30th International Conference on Advances in Geographic Information Systems, 2022

3DPro: Querying Complex Three-Dimensional Data with Progressive Compression and Refinement.
Proceedings of the 25th International Conference on Extending Database Technology, 2022

Select or Suggest? Reinforcement Learning-based Method for High-Accuracy Target Selection on Touchscreens.
Proceedings of the CHI '22: CHI Conference on Human Factors in Computing Systems, New Orleans, LA, USA, 29 April 2022, 2022

Generalizable deep clustering based on Bi-LSTM with applications to sepsis and acute kidney disease populations.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning.
J. Biomed. Informatics, 2021

Identifying risk of opioid use disorder for patients taking opioid medications with deep learning.
J. Am. Medical Informatics Assoc., 2021

Artificial Intelligence in Drug Discovery: Applications and Techniques.
CoRR, 2021

Foveal blur-boosted segmentation of nuclei in histopathology images with shape prior knowledge and probability map constraints.
Bioinform., 2021

Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

IDEAL: a Vector-Raster Hybrid Model for Efficient Spatial Queries over Complex Polygons.
Proceedings of the 22nd IEEE International Conference on Mobile Data Management, 2021

Histopathology Image Registration By Integrated Texture And Spatial Proximity Based Landmark Selection And Modification.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Image Registration with Optimal Regularization Parameter Selection by Learned Auto Encoder Features.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

SPEAR: Dynamic Spatio-Temporal Query Processing over High Velocity Data Streams.
Proceedings of the 37th IEEE International Conference on Data Engineering, 2021

GPU-based Real-time Contact Tracing at Scale.
Proceedings of the SIGSPATIAL '21: 29th International Conference on Advances in Geographic Information Systems, 2021

TRACE: Early Detection of Chronic Kidney Disease Onset with Transformer-Enhanced Feature Embedding.
Proceedings of the Heterogeneous Data Management, Polystores, and Analytics for Healthcare, 2021

Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks.
Proceedings of the Heterogeneous Data Management, Polystores, and Analytics for Healthcare, 2021

A Fine-grain Geospatial and Demographic Analysis of Breast Cancer Patterns in New York State.
Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020
The 28th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2020): virtual, online, USA November 3-6, 2020: conference report.
ACM SIGSPATIAL Special, 2020

Accelerating Spatial Cross-Matching on CPU-GPU Hybrid Platform With CUDA and OpenACC.
Frontiers Big Data, 2020

Modeling methodology for early warning of chronic heart failure based on real medical big data.
Expert Syst. Appl., 2020

Towards Better Opioid Antagonists Using Deep Reinforcement Learning.
CoRR, 2020

Prediction of Pathological Complete Response to Neoadjuvant Chemotherapy in Breast Cancer Using Deep Learning with Integrative Imaging, Molecular and Demographic Data.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Automatic Brain Organ Segmentation with 3D Fully Convolutional Neural Network for Radiation Therapy Treatment Planning.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Opioid Use Disorder at the Extremes of Age: Spatial and Temporal Analysis of Pharmacotherapy Use in Seniors and Adolescents.
Proceedings of the AMIA 2020, 2020

SMOOTH-GAN: Towards Sharp and Smooth Synthetic EHR Data Generation.
Proceedings of the Artificial Intelligence in Medicine, 2020

2019
Guest editorial: special issue on data management and analytics for healthcare.
Distributed Parallel Databases, 2019

MaReIA: a cloud MapReduce based high performance whole slide image analysis framework.
Distributed Parallel Databases, 2019

Scalable and flexible management of medical image big data.
Distributed Parallel Databases, 2019

Intelligent Health Care Data Management Using Blockchain: Current Limitation and Future Research Agenda.
Proceedings of the Heterogeneous Data Management, Polystores, and Analytics for Healthcare, 2019

Liver Steatosis Segmentation With Deep Learning Methods.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Blockchain Enabled Distributed Data Management - A Vision.
Proceedings of the 35th IEEE International Conference on Data Engineering Workshops, 2019

Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records.
Proceedings of the AMIA 2019, 2019

2018
Spatial Queries in the Cloud.
Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018

iSPEED: a Scalable and Distributed In-Memory Based Spatial Query System for Large and Structurally Complex 3D Data.
Proc. VLDB Endow., 2018

Correction to: A framework for annotating OpenStreetMap objects using geo-tagged tweets.
GeoInformatica, 2018

A framework for annotating OpenStreetMap objects using geo-tagged tweets.
GeoInformatica, 2018

Disease phenotyping using deep learning: A diabetes case study.
CoRR, 2018

Deep Reinforcement Learning for Vessel Centerline Tracing in Multi-modality 3D Volumes.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Multi-channel Generative Adversarial Network for Parallel Magnetic Resonance Image Reconstruction in K-space.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

EaserGeocoder: integrative geocoding with machine learning (demo paper).
Proceedings of the 26th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2018

Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Accelerating Cross-Matching Operation of Geospatial Datasets using a CPU-GPU Hybrid Platform.
Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

Social Media Based Analysis of Opioid Epidemic Using Reddit.
Proceedings of the AMIA 2018, 2018

2017
Medical Image Dataset Processing over Cloud/MapReduce with Heterogeneous Architectures.
Proceedings of the Encyclopedia of GIS., 2017

Omicseq: a web-based search engine for exploring omics datasets.
Nucleic Acids Res., 2017

Association Rule Learning and Frequent Sequence Mining of Cancer Diagnoses in New York State.
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2017

High Performance Merging of Massive Data from Genome-Wide Association Studies.
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2017

How Blockchain Could Empower eHealth: An Application for Radiation Oncology - (Extended Abstract).
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2017

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.
Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Self supervised deep representation learning for fine-grained body part recognition.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Automated level set segmentation of histopathologic cells with sparse shape prior support and dynamic occlusion constraint.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Dynamic registration for gigapixel serial whole slide images.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Effective Scalable and Integrative Geocoding for Massive Address Datasets.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017

iSPEED: an Efficient In-Memory Based Spatial Query System for Large-Scale 3D Data with Complex Structures.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017

Spatio-temporal Analysis for New York State SPARCS Data.
Proceedings of the Summit on Clinical Research Informatics, 2017

Parallel Processing over Spatial-Temporal Datasets from Geo, Bio, Climate and Social Science Communities: A Research Roadmap.
Proceedings of the 2017 IEEE International Congress on Big Data, 2017

Secure and Trustable Electronic Medical Records Sharing using Blockchain.
Proceedings of the AMIA 2017, 2017

Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State.
Proceedings of the AMIA 2017, 2017

2016
Predicting the passenger demand on bus services for mobile users.
Pervasive Mob. Comput., 2016

A framework for 3D vessel analysis using whole slide images of liver tissue sections.
Int. J. Comput. Biol. Drug Des., 2016

IEVQ: An Iterative Example-Based Visual Query for Pathology Database.
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2016

Cloud-Based Whole Slide Image Analysis Using MapReduce.
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2016

Robust cell segmentation for histological images of Glioblastoma.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Scalable 3D spatial queries for analytical pathology imaging with MapReduce.
Proceedings of the 24th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, GIS 2016, Burlingame, California, USA, October 31, 2016

Annotating Geographical Objects in OpenStreetMap with Geo-tagged Social Media.
Proceedings of the 9th ACM SIGSPATIAL Workshop on Location-based Social Networks, 2016

Three-Dimension (3D) Blood Vessel Reconstruction and Spatial Analytics with Whole-Slide Histological Images.
Proceedings of the AMIA 2016, 2016

Integrative Spatial Data Analytics for Public Health Studies of New York State.
Proceedings of the AMIA 2016, 2016

2015
Effective Spatial Data Partitioning for Scalable Query Processing.
CoRR, 2015

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies.
BMC Bioinform., 2015

Three-Dimensional Data Analytics for Pathology Imaging.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015

SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015

A 3D Primary Vessel Reconstruction Framework with Serial Microscopy Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Liver whole slide image analysis for 3D vessel reconstruction.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Automated cell segmentation with 3D fluorescence microscopy images.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

A Comparative Study of Demographic Attribute Inference in Twitter.
Proceedings of the Ninth International Conference on Web and Social Media, 2015

Identification of Venous Thromboembolism from Electronic Medical Records with Information Extraction.
Proceedings of the AMIA 2015, 2015

2014
High performance spatial queries for spatial big data: from medical imaging to GIS.
ACM SIGSPATIAL Special, 2014

Report on the Sixth International Workshop on Cloud Data Management (CloudDB 2014).
SIGMOD Rec., 2014

Enabling Ontology Based Semantic Queries in Biomedical Database Systems.
Int. J. Semantic Comput., 2014

Metadata based management and sharing of distributed biomedical data.
Int. J. Metadata Semant. Ontologies, 2014

SATO: a spatial data partitioning framework for scalable query processing.
Proceedings of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2014

High performance integrated spatial big data analytics.
Proceedings of the 3rd ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2014

Haggis: turbocharge a MapReduce based spatial data warehousing system with GPU engine.
Proceedings of the 3rd ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2014

2013
Report on the fourth international workshop on cloud data management (CloudDB 2012).
SIGMOD Rec., 2013

Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.
Proc. VLDB Endow., 2013

HEDC++: An Extended Histogram Estimator for Data in the Cloud.
J. Comput. Sci. Technol., 2013

Preface.
J. Comput. Sci. Technol., 2013

Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data.
J. Am. Medical Informatics Assoc., 2013

Semantically Interoperable XML Data.
Int. J. Semantic Comput., 2013

Demonstration of Hadoop-GIS: a spatial data warehousing system over MapReduce.
Proceedings of the 21st SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2013

CloudDB 2013: fifth international workshop on cloud data management.
Proceedings of the 22nd ACM International Conference on Information and Knowledge Management, 2013

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

ASLForm: An Adaptive Self Learning Medical Form Generating System.
Proceedings of the AMIA 2013, 2013

Event Processing in Sensor Streams.
Proceedings of the Managing and Mining Sensor Data, 2013

2012
XLDB Asia 2012: the first extremely large databases conference at Asia.
SIGMOD Rec., 2012

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems.
Proc. VLDB Endow., 2012

Digital Pathology: Data-Intensive Frontier in Medical Imaging.
Proc. IEEE, 2012

Integrated morphologic analysis for the identification and characterization of disease subtypes.
J. Am. Medical Informatics Assoc., 2012

High performance spatial query processing for large scale scientific data.
Proceedings of the ACM SIGMOD/PODS PhD Symposium 2012, Scottsdale, AZ, USA, May 20, 2012, 2012

Towards building a high performance spatial query system for large scale medical imaging data.
Proceedings of the SIGSPATIAL 2012 International Conference on Advances in Geographic Information Systems (formerly known as GIS), 2012

Enabling ontology based semantic queries in biomedical database systems.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Bridging the unstructured and structured worlds: an adaptive self learning medical form generating system.
Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

HEDC: a histogram estimator for data in the cloud.
Proceedings of the Fourth International Workshop on Cloud Data Management, 2012

You can stop early with COLA: online processing of aggregate queries in the cloud.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

CloudDB 2012: fourth international workshop on cloud data management.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
Proceedings of the AMIA 2012, 2012

2011
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
IEEE Trans. Biomed. Eng., 2011

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.
J. Am. Medical Informatics Assoc., 2011

A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Morphological signatures and genomic correlates in glioblastoma.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

YSmart: Yet Another SQL-to-MapReduce Translator.
Proceedings of the 2011 International Conference on Distributed Computing Systems, 2011

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
An Integrative Approach for In Silico Glioma Research.
IEEE Trans. Biomed. Eng., 2010

A temporal RFID data model for querying physical objects.
Pervasive Mob. Comput., 2010

High Performance Computing Techniques for Scaling Image Analysis Workflows.
Proceedings of the Applied Parallel and Scientific Computing, 2010

An evaluation of feature sets and sampling techniques for de-identification of medical records.
Proceedings of the ACM International Health Informatics Symposium, 2010

High-Performance Systems for in Silico Microscopy Imaging Studies.
Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

2009
Complex RFID event processing.
VLDB J., 2009

2008
ArchIS: an XML-based approach to transaction-time temporal database systems.
VLDB J., 2008

Temporal queries and version management in XML-based document archives.
Data Knowl. Eng., 2008

Native Web Browser Enabled SVG-based Collaborative Multimedia Annotation for Medical Images.
Proceedings of the 24th International Conference on Data Engineering, 2008

Collaboratively Sharing Scientific Data.
Proceedings of the Collaborative Computing: Networking, 2008

2007
SciPort: An Adaptable Scientific Data Integration Platform for Collaborative Scientific Research.
Proceedings of the 33rd International Conference on Very Large Data Bases, 2007

Integrated Data Modeling for Querying Physical Objects in RFID-Enabled Pervasive Computing.
Proceedings of the 8th International Conference on Mobile Data Management (MDM 2007), 2007

Managing and Searching Distributed Multidimensional Annotations with Large Scale Image Data.
Proceedings of the Multimedia Content Analysis and Mining, International Workshop, 2007

Web-based Collaborative Information Integration for Scientific Research.
Proceedings of the 23rd International Conference on Data Engineering, 2007

RFID Data Processing with a Data Stream Query Language.
Proceedings of the 23rd International Conference on Data Engineering, 2007

Using SVG to Model and Query Image Annotations and Their History.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006
Bridging relational database history and the web: the XML approach.
Proceedings of the Eigth ACM International Workshop on Web Information and Data Management (WIDM 2006), 2006

Using XML to Build Efficient Transaction-Time Temporal Database Systems on Relational Databases.
Proceedings of the 22nd International Conference on Data Engineering, 2006

Experiment Management with Metadata-based Integration for Collaborative Scientific Research.
Proceedings of the 22nd International Conference on Data Engineering, 2006

Bridging Physical and Virtual Worlds: Complex Event Processing for RFID Data Streams.
Proceedings of the Advances in Database Technology, 2006

Efficient Temporal Coalescing Query Support in Relational Database Systems.
Proceedings of the Database and Expert Systems Applications, 17th International Conference, 2006

Efficiently Filtering RFID Data Streams.
Proceedings of the First Int'l VLDB Workshop on Clean Databases, 2006

Integrated RFID data modeling: an approach for querying physical objects in pervasive computing.
Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, 2006

2005
An XML-Based Approach to Publishing and Querying the History of Databases.
World Wide Web, 2005

Managing Multiversion Documents & Historical Databases: a Unified Solution Based on XML.
Proceedings of the Eight International Workshop on the Web & Databases (WebDB 2005), 2005

Temporal Management of RFID Data.
Proceedings of the 31st International Conference on Very Large Data Bases, Trondheim, Norway, August 30, 2005

Version Management and Historical Queries in Digital Libraries.
Proceedings of the 12th International Symposium on Temporal Representation and Reasoning (TIME 2005), 2005

Temporal XML? SQL Strikes Back!
Proceedings of the 12th International Symposium on Temporal Representation and Reasoning (TIME 2005), 2005

2004
Temporal Information Management Using XML.
Proceedings of the Conceptual Modeling, 2004

XBiT: An XML-Based Bitemporal Data Model.
Proceedings of the Conceptual Modeling, 2004

2003
Publishing and Querying the Histories of Archived Relational Databases in XML.
Proceedings of the 4th International Conference on Web Information Systems Engineering, 2003

Temporal Queries in XML Document Archives and Web Warehouses.
Proceedings of the 10th International Symposium on Temporal Representation and Reasoning / 4th International Conference on Temporal Logic (TIME-ICTL 2003), 2003

Representing and Querying the Evolution of Databases and their Schemas in XML.
Proceedings of the Fifteenth International Conference on Software Engineering & Knowledge Engineering (SEKE'2003), 2003

2002
Preserving and Querying Histories of XML-Published Relational Databases.
Proceedings of the Advanced Conceptual Modeling Techniques, 2002


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