Geoffrey Fudenberg

According to our database, Geoffrey Fudenberg authored at least 7 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2.

Paulina N. Smaruj, Fahad Kamulegeya, David R. Kelley, Geoffrey Fudenberg

PLoS Comput. Biol., 2025

2024

Bioframe: operations on genomic intervals in <i>Pandas</i> dataframes.

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev

Bioinform., February, 2024

Pairtools: From sequencing data to chromosome contacts.

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev

PLoS Comput. Biol., 2024

Cooltools: Enabling high-resolution Hi-C analysis in Python.

Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A. Oksuz, Sergey Venev, Yao Xiao

PLoS Comput. Biol., 2024

2016

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes.

Ekaterina Khrameeva, Geoffrey Fudenberg, Mikhail S. Gelfand, Leonid A. Mirny

J. Bioinform. Comput. Biol., 2016

2014

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions.

Boryana Doyle, Geoffrey Fudenberg, Maxim Imakaev, Leonid A. Mirny

PLoS Comput. Biol., 2014

2009

Bayesian Image Recovery for Dendritic Structures Under Low Signal-to-Noise Conditions.

Geoffrey Fudenberg, Liam Paninski

IEEE Trans. Image Process., 2009