Liam Paninski

According to our database1, Liam Paninski authored at least 112 papers between 2001 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Towards robust and generalizable representations of extracellular data using contrastive learning.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Bayesian target optimisation for high-precision holographic optogenetics.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Learning Probabilistic Piecewise Rigid Atlases of Model Organisms via Generative Deep Networks.
Proceedings of the Information Processing in Medical Imaging, 2023

Robust Online Multiband Drift Estimation in Electrophysiology Data.
Proceedings of the IEEE International Conference on Acoustics, 2023

Multimodal Microscopy Image Alignment Using Spatial and Shape Information and a Branch-and-Bound Algorithm.
Proceedings of the IEEE International Conference on Acoustics, 2023

2022
Blind demixing methods for recovering dense neuronal morphology from barcode imaging data.
PLoS Comput. Biol., 2022

SemiMultiPose: A Semi-supervised Multi-animal Pose Estimation Framework.
CoRR, 2022

2021
Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders.
PLoS Comput. Biol., 2021

BARcode DEmixing through Non-negative Spatial Regression (BarDensr).
PLoS Comput. Biol., 2021

Nonlinear Decoding of Natural Images From Large-Scale Primate Retinal Ganglion Recordings.
Neural Comput., 2021

A general linear-time inference method for Gaussian Processes on one dimension.
J. Mach. Learn. Res., 2021

Three-dimensional spike localization and improved motion correction for Neuropixels recordings.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

Non-parametric Vignetting Correction for Sparse Spatial Transcriptomics Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Decentralized Motion Inference and Registration of Neuropixel Data.
Proceedings of the IEEE International Conference on Acoustics, 2021

2020
Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data.
PLoS Comput. Biol., 2020

Attentive Clustering Processes.
CoRR, 2020

General linear-time inference for Gaussian Processes on one dimension.
CoRR, 2020

Disentangled Sticky Hierarchical Dirichlet Process Hidden Markov Model.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2020

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Statistical Atlas of C. elegans Neurons.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Demixing Calcium Imaging Data in C. elegans via Deformable Non-negative Matrix Factorization.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Probabilistic Joint Segmentation and Labeling of C. elegans Neurons.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Neural Clustering Processes.
Proceedings of the 37th International Conference on Machine Learning, 2020

2019
Discrete Neural Processes.
CoRR, 2019

Scalable Bayesian inference of dendritic voltage via spatiotemporal recurrent state space models.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

Efficient characterization of electrically evoked responses for neural interfaces.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

BehaveNet: nonlinear embedding and Bayesian neural decoding of behavioral videos.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

Neural Permutation Processes.
Proceedings of the Symposium on Advances in Approximate Bayesian Inference, 2019

Sinkhorn Permutation Variational Marginal Inference.
Proceedings of the Symposium on Advances in Approximate Bayesian Inference, 2019

2018
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
PLoS Comput. Biol., 2018

Amortized Bayesian inference for clustering models.
CoRR, 2018

A Novel Variational Family for Hidden Nonlinear Markov Models.
CoRR, 2018

Scalable Approximate Bayesian Inference for Particle Tracking Data.
Proceedings of the 35th International Conference on Machine Learning, 2018

Reparameterizing the Birkhoff Polytope for Variational Permutation Inference.
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2018

2017
Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays.
PLoS Comput. Biol., 2017

Fast online deconvolution of calcium imaging data.
PLoS Comput. Biol., 2017

Multi-scale approaches for high-speed imaging and analysis of large neural populations.
PLoS Comput. Biol., 2017

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

YASS: Yet Another Spike Sorter.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

OnACID: Online Analysis of Calcium Imaging Data in Real Time.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

Stochastic Bouncy Particle Sampler.
Proceedings of the 34th International Conference on Machine Learning, 2017

Multilayer Recurrent Network Models of Primate Retinal Ganglion Cell Responses.
Proceedings of the 5th International Conference on Learning Representations, 2017

Scalable Variational Inference for Super Resolution Microscopy.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017

Bayesian Learning and Inference in Recurrent Switching Linear Dynamical Systems.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017

2016
Neuroprosthetic Decoder Training as Imitation Learning.
PLoS Comput. Biol., 2016

Automated scalable segmentation of neurons from multispectral images.
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016

Linear dynamical neural population models through nonlinear embeddings.
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016

Fast Active Set Methods for Online Spike Inference from Calcium Imaging.
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016

Partition Functions from Rao-Blackwellized Tempered Sampling.
Proceedings of the 33nd International Conference on Machine Learning, 2016

2015
Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data.
PLoS Comput. Biol., 2015

Encoder-Decoder Optimization for Brain-Computer Interfaces.
PLoS Comput. Biol., 2015

2014
On Quadrature Methods for Refractory Point Process Likelihoods.
Neural Comput., 2014

Fast inference in generalized linear models via expected log-likelihoods.
J. Comput. Neurosci., 2014

Fast state-space methods for inferring dendritic synaptic connectivity.
J. Comput. Neurosci., 2014

Clustered factor analysis of multineuronal spike data.
Proceedings of the Advances in Neural Information Processing Systems 27: Annual Conference on Neural Information Processing Systems 2014, 2014

2013
Bayesian Inference and Online Experimental Design for Mapping Neural Microcircuits.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

Sparse nonnegative deconvolution for compressive calcium imaging: algorithms and phase transitions.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

Robust learning of low-dimensional dynamics from large neural ensembles.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

Auxiliary-variable Exact Hamiltonian Monte Carlo Samplers for Binary Distributions.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

A multi-agent control framework for co-adaptation in brain-computer interfaces.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

Bayesian spike inference from calcium imaging data.
Proceedings of the 2013 Asilomar Conference on Signals, 2013

2012
EMG Prediction From Motor Cortical Recordings via a Nonnegative Point-Process Filter.
IEEE Trans. Biomed. Eng., 2012

Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees.
PLoS Comput. Biol., 2012

Low rank continuous-space graphical models.
Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics, 2012

Fast interior-point inference in high-dimensional sparse, penalized state-space models.
Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics, 2012

Modeling the impact of common noise inputs on the network activity of retinal ganglion cells.
J. Comput. Neurosci., 2012

Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods.
J. Comput. Neurosci., 2012

A Bayesian compressed-sensing approach for reconstructing neural connectivity from subsampled anatomical data.
J. Comput. Neurosci., 2012

Optimal experimental design for sampling voltage on dendritic trees in the low-SNR regime.
J. Comput. Neurosci., 2012

Decoding arm and hand movements across layers of the macaque frontal cortices.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Robust particle filters via sequential pairwise reparameterized Gibbs sampling.
Proceedings of the 46th Annual Conference on Information Sciences and Systems, 2012

2011
Model-Based Decoding, Information Estimation, and Change-Point Detection Techniques for Multineuron Spike Trains.
Neural Comput., 2011

Hidden Markov Models for the Stimulus-Response Relationships of Multistate Neural Systems.
Neural Comput., 2011

Efficient Markov Chain Monte Carlo Methods for Decoding Neural Spike Trains.
Neural Comput., 2011

Automating the design of informative sequences of sensory stimuli.
J. Comput. Neurosci., 2011

Information Rates and Optimal Decoding in Large Neural Populations.
Proceedings of the Advances in Neural Information Processing Systems 24: 25th Annual Conference on Neural Information Processing Systems 2011. Proceedings of a meeting held 12-14 December 2011, 2011

2010
A new look at state-space models for neural data.
J. Comput. Neurosci., 2010

Fast Kalman filtering on quasilinear dendritic trees.
J. Comput. Neurosci., 2010

Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models.
J. Comput. Neurosci., 2010

2009
Bayesian Image Recovery for Dendritic Structures Under Low Signal-to-Noise Conditions.
IEEE Trans. Image Process., 2009

Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings.
PLoS Comput. Biol., 2009

Mean-Field Approximations for Coupled Populations of Generalized Linear Model Spiking Neurons with Markov Refractoriness.
Neural Comput., 2009

Sequential Optimal Design of Neurophysiology Experiments.
Neural Comput., 2009

Maximally Reliable Markov Chains Under Energy Constraints.
Neural Comput., 2009

2008
Undersmoothed Kernel Entropy Estimators.
IEEE Trans. Inf. Theory, 2008

A Coincidence-Based Test for Uniformity Given Very Sparsely Sampled Discrete Data.
IEEE Trans. Inf. Theory, 2008

State-Space Decoding of Goal-Directed Movements.
IEEE Signal Process. Mag., 2008

Integral equation methods for computing likelihoods and their derivatives in the stochastic integrate-and-fire model.
J. Comput. Neurosci., 2008

Designing neurophysiology experiments to optimally constrain receptive field models along parametric submanifolds.
Proceedings of the Advances in Neural Information Processing Systems 21, 2008

2007
Efficient active learning with generalized linear models.
Proceedings of the Eleventh International Conference on Artificial Intelligence and Statistics, 2007

2006
The Spike-Triggered Average of the Integrate-and-Fire Cell Driven by Gaussian White Noise.
Neural Comput., 2006

The most likely voltage path and large deviations approximations for integrate-and-fire neurons.
J. Comput. Neurosci., 2006

Real-time adaptive information-theoretic optimization of neurophysiology experiments.
Proceedings of the Advances in Neural Information Processing Systems 19, 2006

Efficient model-based design of neurophysiological experiments.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005
Statistical encoding model for a primary motor cortical brain-machine interface.
IEEE Trans. Biomed. Eng., 2005

Asymptotic Theory of Information-Theoretic Experimental Design.
Neural Comput., 2005

Comparing integrate-and-fire models estimated using intracellular and extracellular data.
Neurocomputing, 2005

Nonparametric inference of prior probabilities from Bayes-optimal behavior.
Proceedings of the Advances in Neural Information Processing Systems 18 [Neural Information Processing Systems, 2005

Large-scale biophysical parameter estimation in single neurons via constrained linear regression.
Proceedings of the Advances in Neural Information Processing Systems 18 [Neural Information Processing Systems, 2005

2004
Estimating Entropy on m Bins Given Fewer than m Samples.
IEEE Trans. Inf. Theory, 2004

Maximum Likelihood Estimation of a Stochastic Integrate-and-Fire Neural Encoding Model.
Neural Comput., 2004

Variational Minimax Estimation of Discrete Distributions under KL Loss.
Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004

Log-concavity Results on Gaussian Process Methods for Supervised and Unsupervised Learning.
Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004

2003
Estimation of Entropy and Mutual Information.
Neural Comput., 2003

Noise-driven adaptation: in vitro and mathematical analysis.
Neurocomputing, 2003

Robustness of neuroprosthetic decoding algorithms.
Biol. Cybern., 2003

Maximum Likelihood Estimation of a Stochastic Integrate-and-Fire Neural Model.
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003

Design of Experiments via Information Theory.
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003

2002
Convergence Properties of Some Spike-Triggered Analysis Techniques.
Proceedings of the Advances in Neural Information Processing Systems 15 [Neural Information Processing Systems, 2002

2001
Stochastic optimal control and the human oculomotor system.
Neurocomputing, 2001


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