Gert-Jan Bekker

According to our database, Gert-Jan Bekker authored at least 6 papers between 2016 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2026

Elucidating Ligand Charge Effects in MR1 Cell-Surface Translocation Using Molecular Simulations.

Toshiki Fujii, Mitsugu Araki, Shigeyuki Matsumoto, Biao Ma, Takao Otsuka, Gert-Jan Bekker, Narutoshi Kamiya, Hiroaki Ohno, Shinsuke Inuki, Yasushi Okuno

J. Chem. Inf. Model., 2026

2024

Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking.

Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya

J. Chem. Inf. Model., 2024

2021

Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking.

Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

J. Chem. Inf. Model., 2021

2020

Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking.

Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya

J. Comput. Chem., 2020

2017

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.

Akira R. Kinjo, Gert-Jan Bekker, Hirofumi Suzuki, Yuko Tsuchiya, Takeshi Kawabata, Yasuyo Ikegawa, Haruki Nakamura

Nucleic Acids Res., 2017

2016

Molmil: a molecular viewer for the PDB and beyond.

Gert-Jan Bekker, Haruki Nakamura, Akira R. Kinjo

J. Cheminformatics, 2016