Haim J. Wolfson

According to our database, Haim J. Wolfson authored at least 71 papers between 1988 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions.

Jérôme Tubiana, Lucia Adriana-Lifshits, Michael Nissan, Matan Gabay, Inbal Sher, Marina Sova, Haim J. Wolfson, Maayan Gal

PLoS Comput. Biol., February, 2023

SegmA: Residue Segmentation of cryo-EM density maps.

Mark Rozanov, Haim J. Wolfson

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2018

AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density maps.

Mark Rozanov, Haim J. Wolfson

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

SnapDock - template-based docking by Geometric Hashing.

Michael Estrin, Haim J. Wolfson

Bioinform., 2017

2016

PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm.

Daniel Zaidman, Haim J. Wolfson

Bioinform., 2016

Memdock: an α-helical membrane protein docking algorithm.

Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson

Bioinform., 2016

Accelerating protein-protein complex validation by GPU based funnel generation.

Michael Zabejansky, Haim J. Wolfson

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes.

Naama Amir, Dan Cohen, Haim J. Wolfson

Bioinform., 2015

DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract).

Naama Amir, Dan Cohen, Haim J. Wolfson

Proceedings of the Research in Computational Molecular Biology, 2015

2011

MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.

Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali

Nucleic Acids Res., 2011

GOSSIP: a method for fast and accurate global alignment of protein structures.

Ilona Kifer, Ruth Nussinov, Haim J. Wolfson

Bioinform., 2011

PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors.

Elad Donsky, Haim J. Wolfson

Bioinform., 2011

PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract).

Elad Donsky, Haim J. Wolfson

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

Inexact Graph Matching by "Geodesic Hashing" for the Alignment of Pseudoknoted RNA Secondary Structures.

Mira Abraham, Haim J. Wolfson

Proceedings of the Prague Stringology Conference 2011, 2011

2010

FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.

Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2010

2009

RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases.

Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2009

Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications.

Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson

J. Chem. Inf. Model., 2009

2008

MolAxis: a server for identification of channels in macromolecules.

Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov

Nucleic Acids Res., 2008

MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions.

Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2008

PharmaGist: a webserver for ligand-based pharmacophore detection.

Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2008

FireDock: a web server for fast interaction refinement in molecular docking.

Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2008

Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules.

Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson

J. Comput. Biol., 2008

Structural similarity of genetically interacting proteins.

Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan

BMC Syst. Biol., 2008

2007

EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps.

Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

IEEE ACM Trans. Comput. Biol. Bioinform., 2007

2006

The ARTS web server for aligning RNA tertiary structures.

Oranit Dror, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2006

The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection.

Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson

J. Comput. Biol., 2006

A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly.

Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov

Bioinform., 2006

2005

SiteEngines: recognition and comparison of binding sites and protein-protein interfaces.

Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2005

PatchDock and SymmDock: servers for rigid and symmetric docking.

Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2005

Multiple Docking for Protein Structure Prediction.

Yuval Inbar, Haim J. Wolfson, Ruth Nussinov

Int. J. Robotics Res., 2005

Discovery of Protein Substructures in EM Maps.

Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005

Recognition of Binding Patterns Common to a Set of Protein Structures.

Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Research in Computational Molecular Biology, 2005

ARTS: alignment of RNA tertiary structures.

Oranit Dror, Ruth Nussinov, Haim J. Wolfson

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces.

Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Computational Life Sciences, First International Symposium, 2005

2004

BioInfo3D: a suite of tools for structural bioinformatics.

Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson

Nucleic Acids Res., 2004

FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions.

Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

J. Comput. Biol., 2004

Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations.

Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

2003

Spatial Pattern Detection in Structural Bioinformatics.

Haim J. Wolfson

Proceedings of the Mathematical Methods for Protein Structure Analysis and Design, 2003

Protein structure prediction via combinatorial assembly of sub-structural units.

Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

MASS: multiple structural alignment by secondary structures.

Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002

MultiProt - A Multiple Protein Structural Alignment Algorithm.

Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Efficient Unbound Docking of Rigid Molecules.

Dina Duhovny, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

2001

MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins.

Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson

J. Comput. Biol., 2001

A hierarchical, building-block-based computational scheme for protein structure prediction.

Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov

IBM J. Res. Dev., 2001

Protein flexibility and electrostatic interactions.

Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov

IBM J. Res. Dev., 2001

2000

Alignment of Flexible Protein Structures.

Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999

Multiple Structural Alignment and Core Detection by Geometric Hashing.

Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility.

Bilha Sandak, Ruth Nussinov, Haim J. Wolfson

J. Comput. Biol., 1998

[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces.

Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson

Proceedings of the German Conference on Bioinformatics, 1998

1996

A new method of estimating shape similarity.

Konstantin Y. Kupeev, Haim J. Wolfson

Pattern Recognit. Lett., 1996

Docking of Conformationally Flexible Proteins.

Bilha Sandak, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996

1995

Context-free attentional operators: The generalized symmetry transform.

Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun

Int. J. Comput. Vis., 1995

An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching.

Bilha Sandak, Ruth Nussinov, Haim J. Wolfson

Comput. Appl. Biosci., 1995

1994

On shape similarity.

Konstantin Y. Kupeev, Haim J. Wolfson

Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

Docking of protein molecules.

Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson

Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

Partial matching of 3-D objects in CAD/CAM systems.

Efi Cohen, Haim J. Wolfson

Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

1993

3-D Docking of Protein Molecules.

Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992

3-D Substructure Matching in Protein Molecules.

Daniel Fischer, Ruth Nussinov, Haim J. Wolfson

Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

1991

Generalizing the generalized hough transform.

Haim J. Wolfson

Pattern Recognit. Lett., 1991

3-D curve matching using splines.

Eyal Kishon, Trevor Hastie, Haim J. Wolfson

J. Field Robotics, 1991

On the error analysis of 'geometric hashing'.

Yehezkel Lamdan, Haim J. Wolfson

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1991

Articulated object recognition, or: how to generalize the generalized Hough transform.

Avinoam Beinglass, Haim J. Wolfson

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1991

1990

Affine invariant model-based object recognition.

Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson

IEEE Trans. Robotics Autom., 1990

On curve matching.

Haim J. Wolfson

IEEE Trans. Pattern Anal. Mach. Intell., 1990

Detection of interest points using symmetry.

Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun

Proceedings of the Third International Conference on Computer Vision, 1990

Model-Based Object Recognition by Geometric Hashing.

Haim J. Wolfson

Proceedings of the Computer Vision, 1990

1989

Solving jigsaw puzzles by a robot.

Grigore C. Burdea, Haim J. Wolfson

IEEE Trans. Robotics Autom., 1989

1988

On recognition of 3-D objects from 2-D images.

Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson

Proceedings of the 1988 IEEE International Conference on Robotics and Automation, 1988

An improved model-based matching method using footprints.

Jiawei Hong, Haim J. Wolfson

Proceedings of the 9th International Conference on Pattern Recognition, 1988

Geometric Hashing: A General And Efficient Model-based Recognition Scheme.

Yehezkel Lamdan, Haim J. Wolfson

Proceedings of the Second International Conference on Computer Vision, 1988

Object recognition by affine invariant matching.

Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1988