Harel Weinstein

Orcid: 0000-0003-3473-9818

According to our database1, Harel Weinstein authored at least 22 papers between 1997 and 2023.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables.
Proceedings of the Platform for Advanced Scientific Computing Conference, 2023

Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations.
Proceedings of the 19th IEEE International Conference on e-Science, 2023

A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

A lightweight method for evaluating <i>in situ</i> workflow efficiency.
J. Comput. Sci., 2021

Membrane lipids are both the substrates and a mechanistically responsive environment of TMEM16 scramblase proteins.
J. Comput. Chem., 2020

A Novel Metric to Evaluate In Situ Workflows.
Proceedings of the Computational Science - ICCS 2020, 2020

Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers.
Proceedings of the 15th International Conference on eScience, 2019

Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems.
Entropy, 2015

NbIT - A New Information Theory-Based Analysis of Allosteric Mechanisms Reveals Residues that Underlie Function in the Leucine Transporter LeuT.
PLoS Comput. Biol., 2014

N-body Information Theory (NbIT) Analysis of Rigid-Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

Ligand-Dependent Conformations and Dynamics of the Serotonin 5-HT<sub>2A</sub> Receptor Determine Its Activation and Membrane-Driven Oligomerization Properties.
PLoS Comput. Biol., 2012

TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Modeling activated states of GPCRs: the rhodopsin template.
J. Comput. Aided Mol. Des., 2006

Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.
J. Comput. Aided Mol. Des., 2006

PDZBase: a protein?Cprotein interaction database for PDZ-domains.
Bioinform., 2005

A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
Bioinform., 2004

Building protein diagrams on the web with the residue-based diagram editor RbDe.
Nucleic Acids Res., 2003

Batch mode generation of residue-based diagrams of proteins.
Bioinform., 2003

Key issues in the computational simulation of GPCR function: representation of loop domains.
J. Comput. Aided Mol. Des., 2002

Brownian dynamics simulations of the reactions of hydrated electrons with components of DNAs and a DNA double-helix.
J. Comput. Chem., 1997